Hector Corrada Bravo
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/epivizrStandalone |
| Branch: master |
| Last Commit: 1d86127 |
| Last Changed Date: 2018-10-30 11:54:36 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 11:46:10 -0400 (Tue, 09 Apr 2019).
| Package 506/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| epivizrStandalone 1.11.0 Hector Corrada Bravo
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: epivizrStandalone |
| Version: 1.11.0 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:epivizrStandalone.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings epivizrStandalone_1.11.0.tar.gz |
| StartedAt: 2019-04-09 00:21:46 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 00:25:34 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 227.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: epivizrStandalone.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:epivizrStandalone.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings epivizrStandalone_1.11.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/epivizrStandalone.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘epivizrStandalone/DESCRIPTION’ ... OK * this is package ‘epivizrStandalone’ version ‘1.11.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘epivizrStandalone’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
epivizrStandalone.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL epivizrStandalone ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘epivizrStandalone’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'S4Vectors::merge' by 'git2r::merge' when loading 'epivizrStandalone' Warning: replacing previous import 'S4Vectors::head' by 'git2r::head' when loading 'epivizrStandalone' Warning: replacing previous import 'S4Vectors::as.data.frame' by 'git2r::as.data.frame' when loading 'epivizrStandalone' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'S4Vectors::merge' by 'git2r::merge' when loading 'epivizrStandalone' Warning: replacing previous import 'S4Vectors::head' by 'git2r::head' when loading 'epivizrStandalone' Warning: replacing previous import 'S4Vectors::as.data.frame' by 'git2r::as.data.frame' when loading 'epivizrStandalone' ** testing if installed package can be loaded from final location Warning: replacing previous import 'S4Vectors::merge' by 'git2r::merge' when loading 'epivizrStandalone' Warning: replacing previous import 'S4Vectors::head' by 'git2r::head' when loading 'epivizrStandalone' Warning: replacing previous import 'S4Vectors::as.data.frame' by 'git2r::as.data.frame' when loading 'epivizrStandalone' ** testing if installed package keeps a record of temporary installation path * DONE (epivizrStandalone)
epivizrStandalone.Rcheck/tests/testthat.Rout
R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(epivizrStandalone)
Loading required package: epivizr
Warning messages:
1: replacing previous import 'S4Vectors::merge' by 'git2r::merge' when loading 'epivizrStandalone'
2: replacing previous import 'S4Vectors::head' by 'git2r::head' when loading 'epivizrStandalone'
3: replacing previous import 'S4Vectors::as.data.frame' by 'git2r::as.data.frame' when loading 'epivizrStandalone'
>
> test_check("epivizrStandalone")
══ testthat results ═══════════════════════════════════════════════════════════
OK: 5 SKIPPED: 3 FAILED: 0
>
> proc.time()
user system elapsed
12.418 0.425 12.829
epivizrStandalone.Rcheck/epivizrStandalone-Ex.timings
| name | user | system | elapsed | |
| setStandalone | 0.000 | 0.000 | 0.001 | |
| startStandalone | 0.106 | 0.004 | 0.110 | |
| startStandaloneApp | 0.036 | 0.000 | 0.036 | |