Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-03 12:33:55 -0400 (Wed, 03 Apr 2019).
Package 378/1696 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
dagLogo 1.21.1 Jianhong Ou
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: dagLogo |
Version: 1.21.1 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:dagLogo.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings dagLogo_1.21.1.tar.gz |
StartedAt: 2019-04-03 00:17:47 -0400 (Wed, 03 Apr 2019) |
EndedAt: 2019-04-03 00:22:32 -0400 (Wed, 03 Apr 2019) |
EllapsedTime: 285.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: dagLogo.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:dagLogo.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings dagLogo_1.21.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/dagLogo.Rcheck’ * using R Under development (unstable) (2018-11-27 r75683) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘dagLogo/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘dagLogo’ version ‘1.21.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘dagLogo’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Unexported object imported by a ':::' call: ‘motifStack:::coloredSymbols’ See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed dagLogo-package 4.932 0.973 6.261 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.9-bioc/meat/dagLogo.Rcheck/00check.log’ for details.
dagLogo.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL dagLogo ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘dagLogo’ ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (dagLogo)
dagLogo.Rcheck/tests/runTests.Rout
R Under development (unstable) (2018-11-27 r75683) -- "Unsuffered Consequences" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin15.6.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > require("dagLogo") || stop("unable to load Package:dagLogo") Loading required package: dagLogo Loading required package: biomaRt Loading required package: grImport Loading required package: grid Loading required package: XML Loading required package: motifStack Loading required package: MotIV Loading required package: BiocGenerics Loading required package: parallel Attaching package: 'BiocGenerics' The following objects are masked from 'package:parallel': clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colMeans, colSums, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min Attaching package: 'MotIV' The following object is masked from 'package:stats': filter Loading required package: ade4 Attaching package: 'ade4' The following object is masked from 'package:BiocGenerics': score Loading required package: Biostrings Loading required package: S4Vectors Loading required package: stats4 Attaching package: 'S4Vectors' The following object is masked from 'package:base': expand.grid Loading required package: IRanges Loading required package: XVector Attaching package: 'Biostrings' The following object is masked from 'package:base': strsplit [1] TRUE > require("Biostrings") || stop("unable to load Package:Biostrings") [1] TRUE > data(seq.example) > data(proteome.example) > library(testthat) > > test_check("dagLogo") ══ testthat results ═══════════════════════════════════════════════════════════ OK: 5 SKIPPED: 4 FAILED: 0 > > proc.time() user system elapsed 15.282 0.684 16.051
dagLogo.Rcheck/dagLogo-Ex.timings
name | user | system | elapsed | |
buildBackgroundModel | 0.623 | 0.041 | 0.671 | |
cleanPeptides | 0.012 | 0.001 | 0.013 | |
colorsets | 0.000 | 0.000 | 0.001 | |
dagHeatmap | 0.824 | 0.048 | 0.889 | |
dagLogo-package | 4.932 | 0.973 | 6.261 | |
dagLogo | 1.515 | 0.026 | 1.598 | |
ecoli.proteome | 0.225 | 0.011 | 0.237 | |
fetchSequence | 0.008 | 0.001 | 0.009 | |
formatSequence | 0.001 | 0.000 | 0.001 | |
nameHash | 0 | 0 | 0 | |
prepareProteome | 0 | 0 | 0 | |
proteome.example | 0.055 | 0.005 | 0.063 | |
seq.example | 0.016 | 0.005 | 0.020 | |
testDAU | 0.771 | 0.025 | 0.799 | |