Package: altcdfenvs

Version: 2.45.1

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/altcdfenvs_2.45.1.tar.gz && rm -rf altcdfenvs.buildbin-libdir && mkdir altcdfenvs.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=altcdfenvs.buildbin-libdir altcdfenvs_2.45.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL altcdfenvs_2.45.1.zip && rm altcdfenvs_2.45.1.tar.gz altcdfenvs_2.45.1.zip

StartedAt: 2019-04-08 19:14:08 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 19:14:57 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 48.6 seconds

RetCode: 0

Status:  OK

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/altcdfenvs_2.45.1.tar.gz && rm -rf altcdfenvs.buildbin-libdir && mkdir altcdfenvs.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=altcdfenvs.buildbin-libdir altcdfenvs_2.45.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL altcdfenvs_2.45.1.zip && rm altcdfenvs_2.45.1.tar.gz altcdfenvs_2.45.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 51124  100 51124    0     0   679k      0 --:--:-- --:--:-- --:--:--  745k

install for i386

* installing *source* package 'altcdfenvs' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
NOTE: arguments in definition for validity method for class 'AffyProbesMatch' changed from (obj) to (object)
in method for 'toHypergraph' with signature '"CdfEnvAffy"': no definition for class "CdfEnvAffy"
** help
*** installing help indices
  converting help for package 'altcdfenvs'
    finding HTML links ... done
    AffyProbesMatch-class                   html  
    CdfEnvAffy-class                        html  
    appendCdfEnvAffy                        html  
    buildCdfEnv.biostrings                  html  
    cdfenv                                  html  
    cdfenvEx                                html  
    copyCdfEnvAffy                          html  
    countduplicated                         html  
    geneNames                               html  
    getxy.probeseq                          html  
    index2xy                                html  
    indexProbes.CdfEnvAffy                  html  
    matchAffyProbes                         html  
    plot.CdfEnvAffy                         html  
    removeIndex                             html  
    toHypergraph                            html  
    unique.CdfEnvAffy                       html  
    utils.FASTA                             html  
    validAffyBatch                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'altcdfenvs' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'altcdfenvs' as altcdfenvs_2.45.1.zip
* DONE (altcdfenvs)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'altcdfenvs' successfully unpacked and MD5 sums checked