Package: TFARM

Version: 1.5.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:TFARM.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings TFARM_1.5.0.tar.gz

StartedAt: 2019-04-09 05:55:49 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 05:58:34 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 164.8 seconds

RetCode: 0

Status:  OK

CheckDir: TFARM.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:TFARM.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings TFARM_1.5.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/TFARM.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘TFARM/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TFARM’ version ‘1.5.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TFARM’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
          user system elapsed
rulesTF0 7.272  0.182   7.461
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL TFARM
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘TFARM’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TFARM)

name	user	system	elapsed
DELTA	0.013	0.004	0.017
IComp	0.064	0.011	0.078
IMP	0.002	0.002	0.004
IMP_Z	0.003	0.002	0.004
IPCA	0.018	0.003	0.021
I_c_2	0.001	0.001	0.003
MCF7_chr1	0.063	0.009	0.071
TF_Imp	0.004	0.003	0.006
distribViz	0.018	0.005	0.023
heatI	0.054	0.016	0.069
imp_FOSL2	0.002	0.002	0.003
items	0.000	0.000	0.001
itemset	0.001	0.001	0.001
p_TFs	0.001	0.001	0.003
presAbs	0.180	0.018	0.198
r_FOSL2	0.003	0.001	0.003
r_TEAD4	0.005	0.001	0.006
r_noFOSL2	0.002	0.001	0.004
rulesGen	0.708	0.036	0.748
rulesTF	0.225	0.002	0.226
rulesTF0	7.272	0.182	7.461