Christian Arnold
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/SNPhood |
| Branch: master |
| Last Commit: cd53135 |
| Last Changed Date: 2018-10-30 11:54:35 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 12:25:11 -0400 (Tue, 09 Apr 2019).
| Package 1521/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SNPhood 1.13.0 Christian Arnold
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | ERROR | skipped | skipped | |||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: SNPhood |
| Version: 1.13.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/SNPhood_1.13.0.tar.gz && rm -rf SNPhood.buildbin-libdir && mkdir SNPhood.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SNPhood.buildbin-libdir SNPhood_1.13.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL SNPhood_1.13.0.zip && rm SNPhood_1.13.0.tar.gz SNPhood_1.13.0.zip |
| StartedAt: 2019-04-08 20:26:08 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 20:28:31 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 143.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/SNPhood_1.13.0.tar.gz && rm -rf SNPhood.buildbin-libdir && mkdir SNPhood.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SNPhood.buildbin-libdir SNPhood_1.13.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL SNPhood_1.13.0.zip && rm SNPhood_1.13.0.tar.gz SNPhood_1.13.0.zip
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install for i386
* installing *source* package 'SNPhood' ...
** R
** data
*** moving datasets to lazyload DB
Registered S3 methods overwritten by 'ggplot2':
method from
[.quosures rlang
c.quosures rlang
print.quosures rlang
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SNPhood'
finding HTML links ... done
SNPhood-class html
SNPhood html
SNPhood.o html
analyzeSNPhood html
finding level-2 HTML links ... done
annotation-methods html
annotationBins html
annotationBins2 html
annotationDatasets html
annotationReadGroups html
annotationRegions html
associateGenotypes html
bins-methods html
changeObjectIntegrityChecking html
collectFiles html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpIhalhQ/R.INSTALL216c27f3330d/SNPhood/man/collectFiles.Rd:46: file link 'path' in package 'Rsamtools' does not exist and so has been treated as a topic
convertToAllelicFractions html
counts-method html
datasets-methods html
deleteDatasets html
deleteReadGroups html
deleteRegions html
enrichment-methods html
getDefaultParameterList html
mergeReadGroups html
parameters-methods html
plotAllelicBiasResults html
plotAllelicBiasResultsOverview html
plotAndCalculateCorrelationDatasets html
plotAndCalculateWeakAndStrongGenotype html
plotAndClusterMatrix html
plotAndSummarizeAllelicBiasTest html
plotBinCounts html
plotClusterAverage html
plotFDRResults html
plotGenotypesPerCluster html
plotGenotypesPerSNP html
plotRegionCounts html
readGroups-methods html
regions-methods html
renameBins html
renameDatasets html
renameReadGroups html
renameRegions html
results html
testForAllelicBiases html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SNPhood' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SNPhood' as SNPhood_1.13.0.zip
* DONE (SNPhood)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'SNPhood' successfully unpacked and MD5 sums checked