Package: REMP

Version: 1.7.1

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:REMP.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings REMP_1.7.1.tar.gz

StartedAt: 2019-02-27 04:04:54 -0500 (Wed, 27 Feb 2019)

EndedAt: 2019-02-27 04:31:18 -0500 (Wed, 27 Feb 2019)

EllapsedTime: 1583.8 seconds

RetCode: 0

Status:  OK

CheckDir: REMP.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:REMP.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings REMP_1.7.1.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/REMP.Rcheck’
* using R Under development (unstable) (2019-01-21 r75999)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘REMP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘REMP’ version ‘1.7.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘REMP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
GRannot         18.486  0.599  22.580
remp            13.943  1.278  13.261
remprofile      11.645  0.800  13.988
initREMP         8.538  0.647  11.223
grooMethy        7.492  0.176  10.134
fetchRMSK        6.731  0.335   9.186
getGM12878       5.267  0.336   6.067
fetchRefSeqGene  3.299  0.108   5.213
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL REMP
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘REMP’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (REMP)

name	user	system	elapsed
GRannot	18.486	0.599	22.580
REMParcel-class	0.000	0.001	0.001
REMProduct-class	0.002	0.000	0.001
fetchRMSK	6.731	0.335	9.186
fetchRefSeqGene	3.299	0.108	5.213
findRECpG	1.448	0.407	4.182
getBackend	0.112	1.276	1.393
getGM12878	5.267	0.336	6.067
grooMethy	7.492	0.176	10.134
initREMP	8.538	0.647	11.223
options	0.001	0.000	0.002
remp	13.943	1.278	13.261
remprofile	11.645	0.800	13.988