Package: NarrowPeaks

Version: 1.27.0

Command: rm -rf NarrowPeaks.buildbin-libdir && mkdir NarrowPeaks.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh NarrowPeaks_1.27.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R NarrowPeaks.buildbin-libdir

StartedAt: 2019-04-09 07:26:10 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 07:26:43 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 32.7 seconds

RetCode: 0

Status:  OK

PackageFile: NarrowPeaks_1.27.0.tgz

PackageFileSize: 428.9 KiB

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### Running command:
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###   rm -rf NarrowPeaks.buildbin-libdir && mkdir NarrowPeaks.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh NarrowPeaks_1.27.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R NarrowPeaks.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=NarrowPeaks.buildbin-libdir NarrowPeaks_1.27.0.tar.gz'
>>>>>>> 

* installing *source* package ‘NarrowPeaks’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -fPIC  -Wall -g -O2  -c wig2CSARScore.c -o wig2CSARScore.o
wig2CSARScore.c:240:11: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
                                        for(i=i;i<x+span_c;i++){
                                            ˜^˜
wig2CSARScore.c:246:10: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
                                for(i=i;i<=chrL[m];i++)
                                    ˜^˜
wig2CSARScore.c:267:11: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
                                        for(i=i;i<x+span_c;i++){
                                            ˜^˜
wig2CSARScore.c:273:10: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
                                for(i=i;i<=chrL[m];i++)
                                    ˜^˜
wig2CSARScore.c:352:11: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
                                        for(i=i;i<start_c+span_c;i++){
                                            ˜^˜
wig2CSARScore.c:359:10: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
                                for(i=i;i<=chrL[m];i++)
                                    ˜^˜
wig2CSARScore.c:380:11: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
                                        for(i=i;i<start_c+span_c;i++){
                                            ˜^˜
wig2CSARScore.c:387:10: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
                                for(i=i;i<=chrL[m];i++)
                                    ˜^˜
8 warnings generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -fPIC  -Wall -g -O2  -c wig2CSARScore_R_wrapper.c -o wig2CSARScore_R_wrapper.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o NarrowPeaks.so wig2CSARScore.o wig2CSARScore_R_wrapper.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/NarrowPeaks.buildbin-libdir/00LOCK-NarrowPeaks/00new/NarrowPeaks/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (NarrowPeaks)


>>>>>>> 
>>>>>>> FIXING LINKS FOR NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"