Bioconductor Package Maintainer
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/GenomicRanges |
| Branch: master |
| Last Commit: f25a45f |
| Last Changed Date: 2019-03-25 19:51:07 -0400 (Mon, 25 Mar 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 11:57:58 -0400 (Tue, 09 Apr 2019).
| Package 650/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GenomicRanges 1.35.1 Bioconductor Package Maintainer
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
| Package: GenomicRanges |
| Version: 1.35.1 |
| Command: rm -rf GenomicRanges.buildbin-libdir && mkdir GenomicRanges.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicRanges.buildbin-libdir GenomicRanges_1.35.1.tar.gz |
| StartedAt: 2019-04-09 08:00:44 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 08:01:34 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 50.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: GenomicRanges_1.35.1.zip |
| PackageFileSize: 2.037 MiB |
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### Running command:
###
### rm -rf GenomicRanges.buildbin-libdir && mkdir GenomicRanges.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicRanges.buildbin-libdir GenomicRanges_1.35.1.tar.gz
###
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install for i386
* installing *source* package 'GenomicRanges' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/S4Vectors/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/IRanges/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c IRanges_stubs.c -o IRanges_stubs.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/S4Vectors/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/IRanges/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/S4Vectors/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/IRanges/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c S4Vectors_stubs.c -o S4Vectors_stubs.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/S4Vectors/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/IRanges/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c transcript_utils.c -o transcript_utils.o
transcript_utils.c: In function 'tlocs2rlocs':
transcript_utils.c:143:38: warning: 'end' may be used uninitialized in this function [-Wmaybe-uninitialized]
return on_minus_strand ? end - tloc : start + tloc;
^
transcript_utils.c:120:24: note: 'end' was declared here
int nexons, j, start, end, width;
^
transcript_utils.c:143:38: warning: 'start' may be used uninitialized in this function [-Wmaybe-uninitialized]
return on_minus_strand ? end - tloc : start + tloc;
^
transcript_utils.c:120:17: note: 'start' was declared here
int nexons, j, start, end, width;
^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o GenomicRanges.dll tmp.def IRanges_stubs.o R_init_GenomicRanges.o S4Vectors_stubs.o transcript_utils.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/GenomicRanges.buildbin-libdir/00LOCK-GenomicRanges/00new/GenomicRanges/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GenomicRanges'
finding HTML links ... done
DelegatingGenomicRanges-class html
GNCList-class html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GNCList-class.Rd:46: file link 'NCList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GNCList-class.Rd:47: file link 'NCLists' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GNCList-class.Rd:48: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GNCList-class.Rd:49: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GNCList-class.Rd:55: file link 'NCList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GNCList-class.Rd:79: file link 'NCList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GNCList-class.Rd:79: file link 'NCLists' in package 'IRanges' does not exist and so has been treated as a topic
GPos-class html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GPos-class.Rd:61: file link 'IPos' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GPos-class.Rd:62: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GPos-class.Rd:63: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GPos-class.Rd:65: file link 'IPos' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GPos-class.Rd:80: file link 'seqlevels' in package 'GenomeInfoDb' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GPos-class.Rd:82: file link 'seqlengths' in package 'GenomeInfoDb' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GPos-class.Rd:83: file link 'isCircular' in package 'GenomeInfoDb' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GPos-class.Rd:84: file link 'genome' in package 'GenomeInfoDb' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GPos-class.Rd:132: file link 'Vector' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GPos-class.Rd:150: file link 'IPos' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GPos-class.Rd:169: file link 'snpsBySeqname' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GPos-class.Rd:170: file link 'snpsByOverlaps' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GPos-class.Rd:171: file link 'snpsById' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GPos-class.Rd:172: file link 'SNPlocs' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GPos-class.Rd:175: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
GRanges-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:102: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:104: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:106: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:108: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:126: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:130: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:134: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:179: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:185: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:285: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:309: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:352: file link 'ManyToOneGrouping' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:367: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:404: file link '[' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:432: file link 'c' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:468: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:469: file link 'GAlignmentPairs' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:472: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:472: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:482: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:520: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:522: file link 'Vector' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:522: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRanges-class.Rd:523: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
GRangesList-class html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRangesList-class.Rd:203: file link 'IRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GRangesList-class.Rd:363: file link 'RleList-class' in package 'IRanges' does not exist and so has been treated as a topic
GenomicRanges-comparison html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GenomicRanges-comparison.Rd:115: file link 'reduce' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GenomicRanges-comparison.Rd:115: file link 'disjoin' in package 'GenomicRanges' does not exist and so has been treated as a topic
GenomicRangesList-class html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/GenomicRangesList-class.Rd:16: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic
absoluteRanges html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/absoluteRanges.Rd:39: file link 'seqlengths' in package 'GenomeInfoDb' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/absoluteRanges.Rd:41: file link 'seqlengths' in package 'GenomeInfoDb' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/absoluteRanges.Rd:50: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/absoluteRanges.Rd:65: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/absoluteRanges.Rd:86: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
constraint html
coverage-methods html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/coverage-methods.Rd:13: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/coverage-methods.Rd:16: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/coverage-methods.Rd:17: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/coverage-methods.Rd:17: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/coverage-methods.Rd:19: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/coverage-methods.Rd:20: file link 'GAlignmentPairs' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/coverage-methods.Rd:46: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/coverage-methods.Rd:58: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/coverage-methods.Rd:62: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/coverage-methods.Rd:73: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/coverage-methods.Rd:81: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/coverage-methods.Rd:86: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
findOverlaps-methods html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/findOverlaps-methods.Rd:26: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/findOverlaps-methods.Rd:27: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/findOverlaps-methods.Rd:28: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/findOverlaps-methods.Rd:30: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/findOverlaps-methods.Rd:31: file link 'GAlignmentPairs' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/findOverlaps-methods.Rd:32: file link 'GAlignmentsList' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/findOverlaps-methods.Rd:60: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/findOverlaps-methods.Rd:104: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/findOverlaps-methods.Rd:118: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
genomic-range-squeezers html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomic-range-squeezers.Rd:16: file link 'ranges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomic-range-squeezers.Rd:17: file link 'rglist' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomic-range-squeezers.Rd:19: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomic-range-squeezers.Rd:19: file link 'ranges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomic-range-squeezers.Rd:21: file link 'IRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomic-range-squeezers.Rd:21: file link 'rglist' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomic-range-squeezers.Rd:32: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomic-range-squeezers.Rd:33: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomic-range-squeezers.Rd:34: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomic-range-squeezers.Rd:35: file link 'GAlignmentPairs' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomic-range-squeezers.Rd:36: file link 'GAlignmentsList' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomic-range-squeezers.Rd:37: file link 'Pairs' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomic-range-squeezers.Rd:40: file link 'ranges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomic-range-squeezers.Rd:46: file link 'ranges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomic-range-squeezers.Rd:49: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomic-range-squeezers.Rd:50: file link 'GAlignmentPairs' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomic-range-squeezers.Rd:63: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomic-range-squeezers.Rd:79: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomic-range-squeezers.Rd:82: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomic-range-squeezers.Rd:83: file link 'GAlignmentPairs' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomic-range-squeezers.Rd:84: file link 'GAlignmentsList' in package 'GenomicAlignments' does not exist and so has been treated as a topic
genomicvars html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomicvars.Rd:20: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomicvars.Rd:49: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomicvars.Rd:60: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomicvars.Rd:80: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomicvars.Rd:91: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/genomicvars.Rd:105: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
inter-range-methods html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/inter-range-methods.Rd:104: file link 'reduce' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/inter-range-methods.Rd:112: file link 'gaps' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/inter-range-methods.Rd:121: file link 'disjoin' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/inter-range-methods.Rd:145: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/inter-range-methods.Rd:153: file link 'endoapply' in package 'S4Vectors' does not exist and so has been treated as a topic
intra-range-methods html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/intra-range-methods.Rd:39: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/intra-range-methods.Rd:40: file link 'GAlignmentsList' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/intra-range-methods.Rd:83: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/intra-range-methods.Rd:87: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/intra-range-methods.Rd:91: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/intra-range-methods.Rd:160: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
makeGRangesFromDataFrame html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/makeGRangesFromDataFrame.Rd:16: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/makeGRangesFromDataFrame.Rd:37: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/makeGRangesFromDataFrame.Rd:120: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/makeGRangesFromDataFrame.Rd:142: file link 'getTable' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/makeGRangesFromDataFrame.Rd:146: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
makeGRangesListFromDataFrame html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/makeGRangesListFromDataFrame.Rd:15: file link 'split' in package 'S4Vectors' does not exist and so has been treated as a topic
nearest-methods html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/nearest-methods.Rd:69: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/nearest-methods.Rd:142: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/nearest-methods.Rd:145: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/nearest-methods.Rd:158: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/nearest-methods.Rd:159: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic
phicoef html
setops-methods html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/setops-methods.Rd:45: file link 'punion' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/setops-methods.Rd:45: file link 'pintersect' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/setops-methods.Rd:46: file link 'psetdiff' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/setops-methods.Rd:46: file link 'pgap' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/setops-methods.Rd:47: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/setops-methods.Rd:155: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/setops-methods.Rd:156: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/setops-methods.Rd:167: file link 'mendoapply' in package 'S4Vectors' does not exist and so has been treated as a topic
strand-utils html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/strand-utils.Rd:52: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/strand-utils.Rd:64: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/strand-utils.Rd:65: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/strand-utils.Rd:73: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/strand-utils.Rd:96: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
tile-methods html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/tile-methods.Rd:12: file link 'tile' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/tile-methods.Rd:12: file link 'slidingWindows' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/tile-methods.Rd:30: file link 'tile' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/tile-methods.Rd:35: file link 'tile' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/tile-methods.Rd:65: file link 'tile' in package 'IRanges' does not exist and so has been treated as a topic
tileGenome html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/tileGenome.Rd:68: file link 'IntegerList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8wyiNP/R.INSTALL2d006d2c58b1/GenomicRanges/man/tileGenome.Rd:70: file link 'Views' in package 'IRanges' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GenomicRanges' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/S4Vectors/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/IRanges/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c IRanges_stubs.c -o IRanges_stubs.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/S4Vectors/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/IRanges/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/S4Vectors/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/IRanges/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c S4Vectors_stubs.c -o S4Vectors_stubs.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/S4Vectors/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/IRanges/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c transcript_utils.c -o transcript_utils.o
transcript_utils.c: In function 'tlocs2rlocs':
transcript_utils.c:143:38: warning: 'end' may be used uninitialized in this function [-Wmaybe-uninitialized]
return on_minus_strand ? end - tloc : start + tloc;
^
transcript_utils.c:120:24: note: 'end' was declared here
int nexons, j, start, end, width;
^
transcript_utils.c:143:38: warning: 'start' may be used uninitialized in this function [-Wmaybe-uninitialized]
return on_minus_strand ? end - tloc : start + tloc;
^
transcript_utils.c:120:17: note: 'start' was declared here
int nexons, j, start, end, width;
^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o GenomicRanges.dll tmp.def IRanges_stubs.o R_init_GenomicRanges.o S4Vectors_stubs.o transcript_utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/GenomicRanges.buildbin-libdir/GenomicRanges/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicRanges' as GenomicRanges_1.35.1.zip
* DONE (GenomicRanges)