Georg Stricker
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/GenoGAM |
| Branch: master |
| Last Commit: 800ebfa |
| Last Changed Date: 2019-04-07 18:32:20 -0400 (Sun, 07 Apr 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 13:33:05 -0400 (Tue, 09 Apr 2019).
| Package 639/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GenoGAM 2.1.9 Georg Stricker
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | [ OK ] |
| Package: GenoGAM |
| Version: 2.1.9 |
| Command: rm -rf GenoGAM.buildbin-libdir && mkdir GenoGAM.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GenoGAM_2.1.9.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GenoGAM.buildbin-libdir |
| StartedAt: 2019-04-09 05:26:13 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 05:27:27 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 73.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: GenoGAM_2.1.9.tgz |
| PackageFileSize: 4.878 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GenoGAM.buildbin-libdir && mkdir GenoGAM.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GenoGAM_2.1.9.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GenoGAM.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GenoGAM.buildbin-libdir GenoGAM_2.1.9.tar.gz' >>>>>>> * installing *source* package ‘GenoGAM’ ... ** libs clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD=1 -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD=1 -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c matrixMult.cpp -o matrixMult.o clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GenoGAM.so RcppExports.o matrixMult.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.9-bioc/meat/GenoGAM.buildbin-libdir/GenoGAM/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (GenoGAM) >>>>>>> >>>>>>> FIXING LINKS FOR GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so" install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so" install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so"