Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:56:51 -0400 (Tue, 09 Apr 2019).
Package 687/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
GOSemSim 2.9.1 Guangchuang Yu
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: GOSemSim |
Version: 2.9.1 |
Command: rm -rf GOSemSim.buildbin-libdir && mkdir GOSemSim.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOSemSim.buildbin-libdir GOSemSim_2.9.1.tar.gz |
StartedAt: 2019-04-09 08:06:08 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 08:07:35 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 86.4 seconds |
RetCode: 0 |
Status: OK |
PackageFile: GOSemSim_2.9.1.zip |
PackageFileSize: 1.207 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GOSemSim.buildbin-libdir && mkdir GOSemSim.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOSemSim.buildbin-libdir GOSemSim_2.9.1.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'GOSemSim' ... ** libs C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c ICmethod.cpp -o ICmethod.o ICmethod.cpp: In function 'Rcpp::NumericMatrix infoContentMethod_cpp(Rcpp::StringVector&, Rcpp::StringVector&, Rcpp::List&, Rcpp::NumericVector&, const string&, const string&)': ICmethod.cpp:82:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (std::size_t i=0; i < ic_.size(); i++ ) { ^ ICmethod.cpp:88:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (std::size_t i=0; i < ic_.size(); i++ ) { ^ ICmethod.cpp:107:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (std::size_t i=0; i < anc_.size(); i++ ) { ^ ICmethod.cpp:118:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for ( std::size_t i = 0; i < id1_.size(); i++ ) { ^ ICmethod.cpp:125:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for ( std::size_t j = 0; j < id2_.size(); j++ ) { ^ ICmethod.cpp:152:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for ( std::size_t j = 0; j < id2_.size(); j++ ) { ^ C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o GOSemSim.dll tmp.def ICmethod.o RcppExports.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/GOSemSim.buildbin-libdir/00LOCK-GOSemSim/00new/GOSemSim/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GOSemSim' finding HTML links ... done GOSemSim-package html GOSemSimDATA-class html clusterSim html combineScores html geneSim html goSim html go_term_table html godata html infoContentMethod html load_OrgDb html mclusterSim html mgeneSim html mgoSim html termSim html wangMethod_internal html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GOSemSim' ... ** libs C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c ICmethod.cpp -o ICmethod.o ICmethod.cpp: In function 'Rcpp::NumericMatrix infoContentMethod_cpp(Rcpp::StringVector&, Rcpp::StringVector&, Rcpp::List&, Rcpp::NumericVector&, const string&, const string&)': ICmethod.cpp:82:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (std::size_t i=0; i < ic_.size(); i++ ) { ^ ICmethod.cpp:88:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (std::size_t i=0; i < ic_.size(); i++ ) { ^ ICmethod.cpp:107:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (std::size_t i=0; i < anc_.size(); i++ ) { ^ ICmethod.cpp:118:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for ( std::size_t i = 0; i < id1_.size(); i++ ) { ^ ICmethod.cpp:125:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for ( std::size_t j = 0; j < id2_.size(); j++ ) { ^ ICmethod.cpp:152:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for ( std::size_t j = 0; j < id2_.size(); j++ ) { ^ C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o GOSemSim.dll tmp.def ICmethod.o RcppExports.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/GOSemSim.buildbin-libdir/GOSemSim/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'GOSemSim' as GOSemSim_2.9.1.zip * DONE (GOSemSim)