Package: EMDomics

Version: 2.13.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/EMDomics_2.13.0.tar.gz && rm -rf EMDomics.buildbin-libdir && mkdir EMDomics.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EMDomics.buildbin-libdir EMDomics_2.13.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL EMDomics_2.13.0.zip && rm EMDomics_2.13.0.tar.gz EMDomics_2.13.0.zip

StartedAt: 2019-04-08 19:08:06 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 19:08:31 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 25.4 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/EMDomics_2.13.0.tar.gz && rm -rf EMDomics.buildbin-libdir && mkdir EMDomics.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EMDomics.buildbin-libdir EMDomics_2.13.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL EMDomics_2.13.0.zip && rm EMDomics_2.13.0.tar.gz EMDomics_2.13.0.zip
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install for i386

* installing *source* package 'EMDomics' ...
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'EMDomics'
    finding HTML links ... done
    CVMomics                                html  
    EMDomics                                html  
    KSomics                                 html  
    calculate_cvm                           html  
    calculate_cvm_gene                      html  
    calculate_emd                           html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpc9veRH/R.INSTALL154c1a2e20e0/EMDomics/man/calculate_emd.Rd:101: file link 'emd2d' in package 'emdist' does not exist and so has been treated as a topic
    calculate_emd_gene                      html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpc9veRH/R.INSTALL154c1a2e20e0/EMDomics/man/calculate_emd_gene.Rd:31: file link 'emd2d' in package 'emdist' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpc9veRH/R.INSTALL154c1a2e20e0/EMDomics/man/calculate_emd_gene.Rd:47: file link 'emd2d' in package 'emdist' does not exist and so has been treated as a topic
    calculate_ks                            html  
    calculate_ks_gene                       html  
    emdomics-package                        html  
    plot_cvm_density                        html  
    plot_cvmnull                            html  
    plot_cvmperms                           html  
    plot_emd_density                        html  
    plot_emdnull                            html  
    plot_emdperms                           html  
    plot_ks_density                         html  
    plot_ksnull                             html  
    plot_ksperms                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'EMDomics' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EMDomics' as EMDomics_2.13.0.zip
* DONE (EMDomics)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'EMDomics' successfully unpacked and MD5 sums checked