Ning Leng
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/EBSeqHMM |
| Branch: master |
| Last Commit: 8600f85 |
| Last Changed Date: 2019-01-04 13:30:28 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 12:22:00 -0400 (Tue, 09 Apr 2019).
| Package 474/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| EBSeqHMM 1.17.1 Ning Leng
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: EBSeqHMM |
| Version: 1.17.1 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:EBSeqHMM.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings EBSeqHMM_1.17.1.tar.gz |
| StartedAt: 2019-04-09 02:29:17 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 02:30:37 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 79.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: EBSeqHMM.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:EBSeqHMM.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings EBSeqHMM_1.17.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/EBSeqHMM.Rcheck'
* using R Under development (unstable) (2019-03-09 r76216)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'EBSeqHMM/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'EBSeqHMM' version '1.17.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'EBSeqHMM' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
EBHMMNBfun: no visible binding for global variable 'median'
EBHMMNBfun : <anonymous>: no visible global function definition for
'quantile'
EBHMMNBfun: no visible global function definition for 'optim'
EBHMMNBfunForMulti: no visible binding for global variable 'median'
EBHMMNBfunForMulti : <anonymous>: no visible global function definition
for 'quantile'
EBHMMNBfunForMulti: no visible global function definition for 'optim'
EBSeqHMMTest : <anonymous>: no visible global function definition for
'quantile'
EBTest_ext: no visible global function definition for 'quantile'
EBTest_ext: no visible binding for global variable 'var'
PlotExp: no visible global function definition for 'plot'
PlotExp: no visible global function definition for 'axis'
PlotExp : <anonymous>: no visible global function definition for
'median'
PlotExp: no visible global function definition for 'lines'
beta.mom: no visible global function definition for 'var'
Undefined global functions or variables:
axis lines median optim plot quantile var
Consider adding
importFrom("graphics", "axis", "lines", "plot")
importFrom("stats", "median", "optim", "quantile", "var")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.9-bioc/meat/EBSeqHMM.Rcheck/00check.log'
for details.
EBSeqHMM.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/EBSeqHMM_1.17.1.tar.gz && rm -rf EBSeqHMM.buildbin-libdir && mkdir EBSeqHMM.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EBSeqHMM.buildbin-libdir EBSeqHMM_1.17.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL EBSeqHMM_1.17.1.zip && rm EBSeqHMM_1.17.1.tar.gz EBSeqHMM_1.17.1.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
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install for i386
* installing *source* package 'EBSeqHMM' ...
** R
** data
** demo
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'EBSeqHMM'
finding HTML links ... done
EBHMMNBMultiEM_2chain html
EBHMMNBfun html
EBHMMNBfunForMulti html
EBSeqHMM-package html
EBSeqHMMTest html
EBTest_ext html
finding level-2 HTML links ... done
GeneExampleData html
GetAllPaths html
GetConfidentCalls html
GetDECalls html
IsoExampleList html
LikefunNBHMM html
PlotExp html
beta.mom html
f0 html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'EBSeqHMM' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EBSeqHMM' as EBSeqHMM_1.17.1.zip
* DONE (EBSeqHMM)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'EBSeqHMM' successfully unpacked and MD5 sums checked
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EBSeqHMM.Rcheck/examples_i386/EBSeqHMM-Ex.timings
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EBSeqHMM.Rcheck/examples_x64/EBSeqHMM-Ex.timings
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