Package: CellScore

Version: 1.3.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:CellScore.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings CellScore_1.3.0.tar.gz

StartedAt: 2019-04-08 23:44:50 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 23:51:03 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 372.5 seconds

RetCode: 0

Status:  OK

CheckDir: CellScore.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:CellScore.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings CellScore_1.3.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/CellScore.Rcheck’
* using R Under development (unstable) (2018-11-27 r75683)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CellScore/DESCRIPTION’ ... OK
* this is package ‘CellScore’ version ‘1.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CellScore’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                                 user system elapsed
CellScoreReport                40.088  3.650  44.047
heatmapOnOffMarkers            38.111  2.838  41.391
ScatterplotCellScoreComponents 34.736  2.773  37.993
RugplotCellScore               33.677  2.582  36.600
extractTransitions             33.328  2.722  36.483
PlotCosineSimHeatmap           28.020  1.817  30.156
PcaStandards                   19.886  1.236  21.271
BoxplotCellScore               19.424  1.679  21.262
CosineSimScore                 18.743  1.207  20.159
CellScore                      16.403  1.307  17.738
BarplotOnOff                   12.701  2.008  14.879
OnOff                          11.190  1.433  12.716
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL CellScore
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘CellScore’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CellScore)

name	user	system	elapsed
BarplotOnOff	12.701	2.008	14.879
BoxplotCellScore	19.424	1.679	21.262
CellScore	16.403	1.307	17.738
CellScoreReport	40.088	3.650	44.047
CosineSimScore	18.743	1.207	20.159
OnOff	11.190	1.433	12.716
PcaStandards	19.886	1.236	21.271
PlotCosineSimHeatmap	28.020	1.817	30.156
RugplotCellScore	33.677	2.582	36.600
ScatterplotCellScoreComponents	34.736	2.773	37.993
extractTransitions	33.328	2.722	36.483
heatmapOnOffMarkers	38.111	2.838	41.391
rugplotDonorTargetTest	0.000	0.001	0.001
scatterplotDonorTargetTest	0.001	0.001	0.001