Cardinal 2.1.6
Kylie A. Bemis
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/Cardinal |
| Branch: master |
| Last Commit: 9c8dd9a |
| Last Changed Date: 2019-02-21 16:21:08 -0400 (Thu, 21 Feb 2019) |
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | ERROR | skipped | | |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | [ ERROR ] | skipped | skipped | |
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Cardinal
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* checking for file ‘Cardinal/DESCRIPTION’ ... OK
* preparing ‘Cardinal’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Cardinal-2-guide.Rnw’ using Sweave
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colMeans, colSums, colnames,
dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
rownames, sapply, setdiff, sort, table, tapply, union, unique,
unsplit, which, which.max, which.min
Loading required package: BiocParallel
Loading required package: EBImage
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:base’:
expand.grid
Loading required package: ProtGenerics
Welcome to Cardinal (version 2.1.6)
To get started, view the introductory vignettes with
'browseVignettes("Cardinal")'.
Attaching package: ‘Cardinal’
The following object is masked from ‘package:stats’:
filter
Error: processing vignette 'Cardinal-2-guide.Rnw' failed with diagnostics:
chunk 33
Error in if (nrow(coord) == 0) { : argument is of length zero
--- failed re-building ‘Cardinal-2-guide.Rnw’
--- re-building ‘Cardinal-development.Rnw’ using Sweave
--- finished re-building ‘Cardinal-development.Rnw’
--- re-building ‘Cardinal-walkthrough.Rnw’ using Sweave
--- finished re-building ‘Cardinal-walkthrough.Rnw’
SUMMARY: processing the following file failed:
‘Cardinal-2-guide.Rnw’
Error: Vignette re-building failed.
Execution halted