Chandler Zuo
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/CSSP |
| Branch: master |
| Last Commit: 9cf81bf |
| Last Changed Date: 2018-10-30 11:54:31 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 13:07:53 -0400 (Tue, 09 Apr 2019).
| Package 364/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CSSP 1.21.0 Chandler Zuo
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: CSSP |
| Version: 1.21.0 |
| Command: rm -rf CSSP.buildbin-libdir && mkdir CSSP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CSSP_1.21.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CSSP.buildbin-libdir |
| StartedAt: 2019-04-09 06:53:19 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 06:53:41 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 21.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: CSSP_1.21.0.tgz |
| PackageFileSize: 796.5 KiB |
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### Running command:
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### rm -rf CSSP.buildbin-libdir && mkdir CSSP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CSSP_1.21.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CSSP.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CSSP.buildbin-libdir CSSP_1.21.0.tar.gz'
>>>>>>>
* installing *source* package ‘CSSP’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c bincount.c -o bincount.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c binpower.c -o binpower.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c gridLogMean.c -o gridLogMean.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c gridMGC.c -o gridMGC.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c gridMean.c -o gridMean.o
gridMean.c:10:63: warning: unused variable 'counter' [-Wunused-variable]
R_len_t ng=REAL(ngrid)[0],k,i,j,l,ind[4],n=length(map),newG,counter;
^
gridMean.c:177:63: warning: unused variable 'counter' [-Wunused-variable]
R_len_t ng=REAL(ngrid)[0],k,i,j,l,ind[2],n=length(map),newG,counter;
^
2 warnings generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c gridMode.c -o gridMode.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c gridNonpa.c -o gridNonpa.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c gridSample.c -o gridSample.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c tag2bin.c -o tag2bin.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CSSP.so bincount.o binpower.o gridLogMean.o gridMGC.o gridMean.o gridMode.o gridNonpa.o gridSample.o tag2bin.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/CSSP.buildbin-libdir/00LOCK-CSSP/00new/CSSP/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CSSP)
>>>>>>>
>>>>>>> FIXING LINKS FOR CSSP.buildbin-libdir/CSSP/libs//CSSP.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "CSSP.buildbin-libdir/CSSP/libs//CSSP.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "CSSP.buildbin-libdir/CSSP/libs//CSSP.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "CSSP.buildbin-libdir/CSSP/libs//CSSP.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "CSSP.buildbin-libdir/CSSP/libs//CSSP.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "CSSP.buildbin-libdir/CSSP/libs//CSSP.so"