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CHECK report for AnnotationDbi on tokay2

This page was generated on 2019-04-09 11:55:27 -0400 (Tue, 09 Apr 2019).

Package 57/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AnnotationDbi 1.45.1
Bioconductor Package Maintainer
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/AnnotationDbi
Branch: master
Last Commit: 31c8594
Last Changed Date: 2019-03-04 21:39:37 -0400 (Mon, 04 Mar 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: AnnotationDbi
Version: 1.45.1
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:AnnotationDbi.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings AnnotationDbi_1.45.1.tar.gz
StartedAt: 2019-04-09 01:04:53 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 01:13:37 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 524.0 seconds
RetCode: 0
Status:  OK  
CheckDir: AnnotationDbi.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:AnnotationDbi.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings AnnotationDbi_1.45.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/AnnotationDbi.Rcheck'
* using R Under development (unstable) (2019-03-09 r76216)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'AnnotationDbi/DESCRIPTION' ... OK
* this is package 'AnnotationDbi' version '1.45.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'AnnotationDbi' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.4Mb
  sub-directories of 1Mb or more:
    extdata   6.0Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
createORGANISMSeeds: no visible global function definition for
  'makeAnnDbMapSeeds'
Undefined global functions or variables:
  makeAnnDbMapSeeds
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
AnnDbPkg-checker          36.13   0.76   59.94
Bimap-direction            4.84   2.05    6.89
InparanoidColsAndKeytypes  3.61   0.11   97.55
Bimap-toTable              2.95   0.09    5.42
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
AnnDbPkg-checker 38.71   0.56   39.27
Bimap-direction   3.78   2.30    6.11
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'AnnotationDbi_unit_tests.R'
 OK
** running tests for arch 'x64' ...
  Running 'AnnotationDbi_unit_tests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.9-bioc/meat/AnnotationDbi.Rcheck/00check.log'
for details.

Installation output

AnnotationDbi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/AnnotationDbi_1.45.1.tar.gz && rm -rf AnnotationDbi.buildbin-libdir && mkdir AnnotationDbi.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AnnotationDbi.buildbin-libdir AnnotationDbi_1.45.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL AnnotationDbi_1.45.1.zip && rm AnnotationDbi_1.45.1.tar.gz AnnotationDbi_1.45.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 3862k  100 3862k    0     0  31.3M      0 --:--:-- --:--:-- --:--:-- 33.0M

install for i386

* installing *source* package 'AnnotationDbi' ...
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'packageName' in package 'AnnotationDbi'
Creating a generic function for 'ls' from package 'base' in package 'AnnotationDbi'
Creating a generic function for 'eapply' from package 'base' in package 'AnnotationDbi'
Creating a generic function for 'exists' from package 'base' in package 'AnnotationDbi'
Creating a generic function for 'sample' from package 'base' in package 'AnnotationDbi'
** help
*** installing help indices
  converting help for package 'AnnotationDbi'
    finding HTML links ... done
    AnnDbObj-class                          html  
    AnnDbPkg-checker                        html  
    AnnotationDb-class                      html  
    AnnotationDbi-internals                 html  
    Bimap-direction                         html  
    Bimap-envirAPI                          html  
    Bimap-keys                              html  
    Bimap-toTable                           html  
    Bimap                                   html  
    BimapFiltering                          html  
    BimapFormatting                         html  
    GOColsAndKeytypes                       html  
    GOFrame                                 html  
    GOTerms-class                           html  
    InparanoidColsAndKeytypes               html  
    KEGGFrame                               html  
    colsAndKeytypes                         html  
    createSimpleBimap                       html  
    inpIDMapper                             html  
    makeGOGraph                             html  
    make_eg_to_go_map                       html  
    orgPackageName                          html  
    print.probetable                        html  
    toSQLStringSet                          html  
    unlist2                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'AnnotationDbi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AnnotationDbi' as AnnotationDbi_1.45.1.zip
* DONE (AnnotationDbi)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'AnnotationDbi' successfully unpacked and MD5 sums checked

Tests output

AnnotationDbi.Rcheck/tests_i386/AnnotationDbi_unit_tests.Rout


R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> require("AnnotationDbi") || stop("unable to load AnnotationDbi package")
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
    rownames, sapply, setdiff, sort, table, tapply, union, unique,
    unsplit, which, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid


Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

[1] TRUE
> 
> AnnotationDbi:::.test()
Loading required package: org.Hs.eg.db

'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:many mapping between keys and columns

'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
Loading required package: RSQLite
Loading required package: org.At.tair.db

Loading required package: org.Sc.sgd.db

Loading required package: GO.db

Loading required package: hgu95av2.db
'select()' returned many:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned many:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned many:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned many:1 mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned many:1 mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned many:1 mapping between keys and columns

'select()' returned 1:1 mapping between keys and columns
'select()' returned many:many mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
Loading required package: hom.Hs.inp.db

'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
Loading required package: reactome.db
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns


RUNIT TEST PROTOCOL -- Tue Apr 09 01:12:01 2019 
*********************************************** 
Number of test functions: 71 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
AnnotationDbi RUnit Tests - 71 test functions, 0 errors, 0 failures
Number of test functions: 71 
Number of errors: 0 
Number of failures: 0 
Warning messages:
1: In .local(x, ...) : returned vector has duplicated names
2: In .local(x, ...) : returned vector has duplicated names
3: call dbDisconnect() when finished working with a connection 
4: In .deprecatedColsMessage() :
  Accessing gene location information via 'CHR','CHRLOC','CHRLOCEND' is
  deprecated. Please use a range based accessor like genes(), or select()
  with columns values like TXCHROM and TXSTART on a TxDb or OrganismDb
  object instead.
5: In .deprecatedColsMessage() :
  Accessing gene location information via 'CHR','CHRLOC','CHRLOCEND' is
  deprecated. Please use a range based accessor like genes(), or select()
  with columns values like TXCHROM and TXSTART on a TxDb or OrganismDb
  object instead.
6: In .deprecatedColsMessage() :
  Accessing gene location information via 'CHR','CHRLOC','CHRLOCEND' is
  deprecated. Please use a range based accessor like genes(), or select()
  with columns values like TXCHROM and TXSTART on a TxDb or OrganismDb
  object instead.
> 
> proc.time()
   user  system elapsed 
  64.07    2.39   82.18

AnnotationDbi.Rcheck/tests_x64/AnnotationDbi_unit_tests.Rout


R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> require("AnnotationDbi") || stop("unable to load AnnotationDbi package")
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
    rownames, sapply, setdiff, sort, table, tapply, union, unique,
    unsplit, which, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid


Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

[1] TRUE
> 
> AnnotationDbi:::.test()
Loading required package: org.Hs.eg.db

'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:many mapping between keys and columns

'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
Loading required package: RSQLite
Loading required package: org.At.tair.db

Loading required package: org.Sc.sgd.db

Loading required package: GO.db

Loading required package: hgu95av2.db
'select()' returned many:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned many:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned many:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned many:1 mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
Warning: You have selected the following columns that can have a many to one
  relationship with the primary key: ACCNUM, ALIAS, ENSEMBL,
  ENSEMBLPROT, ENSEMBLTRANS, ENZYME, EVIDENCE, EVIDENCEALL, GO, GOALL,
  IPI, MAP, OMIM, ONTOLOGY, ONTOLOGYALL, PATH, PFAM, PMID, PROSITE,
  REFSEQ, UCSCKG, UNIGENE, UNIPROT . Because you have selected more
  than a few such columns there is a risk that this selection may
  balloon up into a very large result as the number of rows returned
  multiplies accordingly. To experience smaller/more manageable results
  and faster retrieval times, you might want to consider selecting
  these columns separately.
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned many:1 mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned many:1 mapping between keys and columns

'select()' returned 1:1 mapping between keys and columns
'select()' returned many:many mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
Loading required package: hom.Hs.inp.db

'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
Loading required package: reactome.db
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns


RUNIT TEST PROTOCOL -- Tue Apr 09 01:13:25 2019 
*********************************************** 
Number of test functions: 71 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
AnnotationDbi RUnit Tests - 71 test functions, 0 errors, 0 failures
Number of test functions: 71 
Number of errors: 0 
Number of failures: 0 
Warning messages:
1: In .local(x, ...) : returned vector has duplicated names
2: In .local(x, ...) : returned vector has duplicated names
3: call dbDisconnect() when finished working with a connection 
4: In .deprecatedColsMessage() :
  Accessing gene location information via 'CHR','CHRLOC','CHRLOCEND' is
  deprecated. Please use a range based accessor like genes(), or select()
  with columns values like TXCHROM and TXSTART on a TxDb or OrganismDb
  object instead.
5: In .deprecatedColsMessage() :
  Accessing gene location information via 'CHR','CHRLOC','CHRLOCEND' is
  deprecated. Please use a range based accessor like genes(), or select()
  with columns values like TXCHROM and TXSTART on a TxDb or OrganismDb
  object instead.
6: In .deprecatedColsMessage() :
  Accessing gene location information via 'CHR','CHRLOC','CHRLOCEND' is
  deprecated. Please use a range based accessor like genes(), or select()
  with columns values like TXCHROM and TXSTART on a TxDb or OrganismDb
  object instead.
> 
> proc.time()
   user  system elapsed 
  76.43    3.39   83.40

Example timings

AnnotationDbi.Rcheck/examples_i386/AnnotationDbi-Ex.timings

nameusersystemelapsed
AnnDbObj-class0.330.000.36
AnnDbPkg-checker36.13 0.7659.94
AnnotationDb-class0.500.050.55
Bimap-direction4.842.056.89
Bimap-envirAPI0.440.170.61
Bimap-keys0.970.611.58
Bimap-toTable2.950.095.42
Bimap2.231.163.42
BimapFiltering0.140.010.16
BimapFormatting0.30.00.3
GOColsAndKeytypes0.160.000.15
GOFrame2.360.473.05
GOTerms-class000
InparanoidColsAndKeytypes 3.61 0.1197.55
KEGGFrame0.040.000.04
colsAndKeytypes0.170.000.25
createSimpleBimap0.10.00.1
inpIDMapper000
makeGOGraph0.330.020.35
make_eg_to_go_map0.140.010.15
print.probetable0.610.170.78
toSQLStringSet000
unlist20.130.000.13

AnnotationDbi.Rcheck/examples_x64/AnnotationDbi-Ex.timings

nameusersystemelapsed
AnnDbObj-class0.340.040.38
AnnDbPkg-checker38.71 0.5639.27
AnnotationDb-class0.460.010.47
Bimap-direction3.782.306.11
Bimap-envirAPI0.390.190.58
Bimap-keys0.670.591.26
Bimap-toTable1.950.102.05
Bimap2.491.113.61
BimapFiltering0.110.010.13
BimapFormatting0.250.000.25
GOColsAndKeytypes0.140.020.16
GOFrame1.580.512.11
GOTerms-class0.020.000.01
InparanoidColsAndKeytypes4.120.304.42
KEGGFrame0.020.010.04
colsAndKeytypes0.160.000.15
createSimpleBimap0.060.000.06
inpIDMapper000
makeGOGraph0.220.020.24
make_eg_to_go_map0.110.020.12
print.probetable0.640.060.71
toSQLStringSet000
unlist20.110.000.11