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BioC experimental data: CHECK report for pRolocdata on moscato1

This page was generated on 2016-05-28 20:31:13 -0700 (Sat, 28 May 2016).

Package 210/292HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pRolocdata 1.11.0
Laurent Gatto
Snapshot Date: 2016-05-28 09:20:19 -0700 (Sat, 28 May 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/pRolocdata
Last Changed Rev: 3763 / Revision: 3781
Last Changed Date: 2016-05-03 14:48:02 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK [ OK ] OK 

Summary

Package: pRolocdata
Version: 1.11.0
Command: rm -rf pRolocdata.buildbin-libdir pRolocdata.Rcheck && mkdir pRolocdata.buildbin-libdir pRolocdata.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=pRolocdata.buildbin-libdir pRolocdata_1.11.0.tar.gz >pRolocdata.Rcheck\00install.out 2>&1 && cp pRolocdata.Rcheck\00install.out pRolocdata-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=pRolocdata.buildbin-libdir --install="check:pRolocdata-install.out" --force-multiarch --no-vignettes --timings pRolocdata_1.11.0.tar.gz
StartedAt: 2016-05-28 15:56:03 -0700 (Sat, 28 May 2016)
EndedAt: 2016-05-28 16:02:51 -0700 (Sat, 28 May 2016)
EllapsedTime: 407.8 seconds
RetCode: 0
Status:  OK  
CheckDir: pRolocdata.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf pRolocdata.buildbin-libdir pRolocdata.Rcheck && mkdir pRolocdata.buildbin-libdir pRolocdata.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=pRolocdata.buildbin-libdir pRolocdata_1.11.0.tar.gz >pRolocdata.Rcheck\00install.out 2>&1 && cp pRolocdata.Rcheck\00install.out pRolocdata-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=pRolocdata.buildbin-libdir --install="check:pRolocdata-install.out" --force-multiarch --no-vignettes --timings pRolocdata_1.11.0.tar.gz
###
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* using log directory 'D:/biocbld/bbs-3.4-data-experiment/meat/pRolocdata.Rcheck'
* using R version 3.3.0 (2016-05-03)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pRolocdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pRolocdata' version '1.11.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pRolocdata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 24.6Mb
  sub-directories of 1Mb or more:
    data      8.2Mb
    extdata  16.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
           user system elapsed
mulvey2015 5.46   0.04    5.99
fabre2015  4.93   0.17   62.10
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
           user system elapsed
mulvey2015 6.58   0.06    6.73
fabre2015  5.72   0.09   31.17
groen2014  5.63   0.07    5.73
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.4-data-experiment/meat/pRolocdata.Rcheck/00check.log'
for details.


pRolocdata.Rcheck/00install.out:


install for i386

* installing *source* package 'pRolocdata' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'pRolocdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pRolocdata' as pRolocdata_1.11.0.zip
* DONE (pRolocdata)

pRolocdata.Rcheck/examples_i386/pRolocdata-Ex.timings:

nameusersystemelapsed
E14TG2a0.030.010.05
andy20110.240.000.23
at_chloro0.120.000.14
dunkley20060.020.000.02
fabre2015 4.93 0.1762.10
foster20060.090.000.10
groen20144.070.034.13
hall20090.160.000.15
havugimana20120.390.020.40
hyperLOPIT20150.130.000.13
kirkwood20130.060.000.06
kristensen20120.050.000.05
mulvey20155.460.045.99
nikolovski20120.490.020.52
nikolovski20140.360.002.10
pRolocdata0.020.000.02
pRolocmetadata0.030.010.04
tan20090.030.000.03
trotter20100.330.022.03

pRolocdata.Rcheck/examples_x64/pRolocdata-Ex.timings:

nameusersystemelapsed
E14TG2a0.080.000.07
andy20110.110.020.13
at_chloro0.170.000.19
dunkley20060.020.000.01
fabre2015 5.72 0.0931.17
foster20060.040.020.05
groen20145.630.075.73
hall20090.220.020.70
havugimana20120.580.000.58
hyperLOPIT20150.110.000.11
kirkwood20130.040.020.06
kristensen20120.040.000.03
mulvey20156.580.066.73
nikolovski20120.620.062.54
nikolovski20140.350.050.39
pRolocdata0.010.000.01
pRolocmetadata0.030.010.05
tan20090.030.000.03
trotter20100.330.020.34