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BioC experimental data: CHECK report for KEGGdzPathwaysGEO on moscato1

This page was generated on 2016-05-28 20:31:12 -0700 (Sat, 28 May 2016).

Package 153/292HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
KEGGdzPathwaysGEO 1.11.0
Gaurav Bhatti
Snapshot Date: 2016-05-28 09:20:19 -0700 (Sat, 28 May 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/KEGGdzPathwaysGEO
Last Changed Rev: 3763 / Revision: 3781
Last Changed Date: 2016-05-03 14:48:02 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK [ OK ] OK 

Summary

Package: KEGGdzPathwaysGEO
Version: 1.11.0
Command: rm -rf KEGGdzPathwaysGEO.buildbin-libdir KEGGdzPathwaysGEO.Rcheck && mkdir KEGGdzPathwaysGEO.buildbin-libdir KEGGdzPathwaysGEO.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGdzPathwaysGEO.buildbin-libdir KEGGdzPathwaysGEO_1.11.0.tar.gz >KEGGdzPathwaysGEO.Rcheck\00install.out 2>&1 && cp KEGGdzPathwaysGEO.Rcheck\00install.out KEGGdzPathwaysGEO-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=KEGGdzPathwaysGEO.buildbin-libdir --install="check:KEGGdzPathwaysGEO-install.out" --force-multiarch --no-vignettes --timings KEGGdzPathwaysGEO_1.11.0.tar.gz
StartedAt: 2016-05-28 15:11:36 -0700 (Sat, 28 May 2016)
EndedAt: 2016-05-28 15:25:24 -0700 (Sat, 28 May 2016)
EllapsedTime: 827.9 seconds
RetCode: 0
Status:  OK  
CheckDir: KEGGdzPathwaysGEO.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf KEGGdzPathwaysGEO.buildbin-libdir KEGGdzPathwaysGEO.Rcheck && mkdir KEGGdzPathwaysGEO.buildbin-libdir KEGGdzPathwaysGEO.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGdzPathwaysGEO.buildbin-libdir KEGGdzPathwaysGEO_1.11.0.tar.gz >KEGGdzPathwaysGEO.Rcheck\00install.out 2>&1 && cp KEGGdzPathwaysGEO.Rcheck\00install.out KEGGdzPathwaysGEO-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=KEGGdzPathwaysGEO.buildbin-libdir --install="check:KEGGdzPathwaysGEO-install.out" --force-multiarch --no-vignettes --timings KEGGdzPathwaysGEO_1.11.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck'
* using R version 3.3.0 (2016-05-03)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'KEGGdzPathwaysGEO/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'KEGGdzPathwaysGEO' version '1.11.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'KEGGdzPathwaysGEO' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 300.7Mb
  sub-directories of 1Mb or more:
    data  300.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  'Biobase' 'BiocGenerics'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
        user system elapsed
GSE3467 0.14   0.02    5.62
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbld/bbs-3.4-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck/00check.log'
for details.


KEGGdzPathwaysGEO.Rcheck/00install.out:


install for i386

* installing *source* package 'KEGGdzPathwaysGEO' ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'KEGGdzPathwaysGEO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'KEGGdzPathwaysGEO' as KEGGdzPathwaysGEO_1.11.0.zip
* DONE (KEGGdzPathwaysGEO)

KEGGdzPathwaysGEO.Rcheck/examples_i386/KEGGdzPathwaysGEO-Ex.timings:

nameusersystemelapsed
GSE12970.110.010.13
GSE147620.210.020.23
GSE154710.390.020.41
GSE165150.220.000.21
GSE188420.460.020.47
GSE191880.730.010.75
GSE197280.160.000.16
GSE201530.140.000.14
GSE202910.090.000.09
GSE213540.140.000.14
GSE34670.160.030.19
GSE35850.050.000.05
GSE36780.120.000.12
GSE41070.170.000.17
GSE5281_EC0.160.000.16
GSE5281_HIP0.160.020.17
GSE5281_VCX0.180.010.20
GSE6956AA0.050.000.05
GSE6956C0.080.000.08
GSE7810.060.000.06
GSE86710.360.000.36
GSE87620.170.000.17
GSE93480.390.040.42
GSE94760.160.000.16
KEGGdzPathwaysGEO-package0.420.000.42

KEGGdzPathwaysGEO.Rcheck/examples_x64/KEGGdzPathwaysGEO-Ex.timings:

nameusersystemelapsed
GSE12970.140.000.14
GSE147620.170.020.19
GSE154710.370.000.37
GSE165150.220.000.22
GSE188420.680.040.73
GSE191880.700.000.71
GSE197280.150.000.14
GSE201530.120.000.12
GSE202910.090.000.09
GSE213540.130.000.13
GSE34670.140.025.62
GSE35850.080.000.08
GSE36780.170.010.19
GSE41070.240.000.23
GSE5281_EC0.220.000.22
GSE5281_HIP0.120.040.15
GSE5281_VCX0.160.010.18
GSE6956AA0.050.000.05
GSE6956C0.060.000.06
GSE7810.050.000.05
GSE86710.300.020.31
GSE87620.140.000.14
GSE93480.380.010.39
GSE94760.140.000.14
KEGGdzPathwaysGEO-package0.530.000.53