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BioC experimental data: CHECK report for KEGGandMetacoreDzPathwaysGEO on moscato1

This page was generated on 2016-05-28 20:31:20 -0700 (Sat, 28 May 2016).

Package 152/292HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
KEGGandMetacoreDzPathwaysGEO 0.107.0
Gaurav Bhatti
Snapshot Date: 2016-05-28 09:20:19 -0700 (Sat, 28 May 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/KEGGandMetacoreDzPathwaysGEO
Last Changed Rev: 3763 / Revision: 3781
Last Changed Date: 2016-05-03 14:48:02 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK 

Summary

Package: KEGGandMetacoreDzPathwaysGEO
Version: 0.107.0
Command: rm -rf KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO.Rcheck && mkdir KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO_0.107.0.tar.gz >KEGGandMetacoreDzPathwaysGEO.Rcheck\00install.out 2>&1 && cp KEGGandMetacoreDzPathwaysGEO.Rcheck\00install.out KEGGandMetacoreDzPathwaysGEO-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=KEGGandMetacoreDzPathwaysGEO.buildbin-libdir --install="check:KEGGandMetacoreDzPathwaysGEO-install.out" --force-multiarch --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_0.107.0.tar.gz
StartedAt: 2016-05-28 15:10:36 -0700 (Sat, 28 May 2016)
EndedAt: 2016-05-28 15:14:08 -0700 (Sat, 28 May 2016)
EllapsedTime: 212.3 seconds
RetCode: 0
Status:  OK  
CheckDir: KEGGandMetacoreDzPathwaysGEO.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   rm -rf KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO.Rcheck && mkdir KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO_0.107.0.tar.gz >KEGGandMetacoreDzPathwaysGEO.Rcheck\00install.out 2>&1 && cp KEGGandMetacoreDzPathwaysGEO.Rcheck\00install.out KEGGandMetacoreDzPathwaysGEO-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=KEGGandMetacoreDzPathwaysGEO.buildbin-libdir --install="check:KEGGandMetacoreDzPathwaysGEO-install.out" --force-multiarch --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_0.107.0.tar.gz
###
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* using log directory 'D:/biocbld/bbs-3.4-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck'
* using R version 3.3.0 (2016-05-03)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'KEGGandMetacoreDzPathwaysGEO/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'KEGGandMetacoreDzPathwaysGEO' version '0.107.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'KEGGandMetacoreDzPathwaysGEO' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 98.7Mb
  sub-directories of 1Mb or more:
    data  98.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.4-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck/00check.log'
for details.


KEGGandMetacoreDzPathwaysGEO.Rcheck/00install.out:


install for i386

* installing *source* package 'KEGGandMetacoreDzPathwaysGEO' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'KEGGandMetacoreDzPathwaysGEO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'KEGGandMetacoreDzPathwaysGEO' as KEGGandMetacoreDzPathwaysGEO_0.107.0.zip
* DONE (KEGGandMetacoreDzPathwaysGEO)

KEGGandMetacoreDzPathwaysGEO.Rcheck/examples_i386/KEGGandMetacoreDzPathwaysGEO-Ex.timings:

nameusersystemelapsed
GSE11450.490.010.50
GSE119063.600.033.64
GSE14924_CD40.360.040.39
GSE14924_CD80.340.000.34
GSE167590.410.000.44
GSE194200.300.010.31
GSE201640.100.000.11
GSE227800.300.000.29
GSE238780.920.000.92
GSE24739_G00.530.000.53
GSE24739_G10.530.020.55
GSE301530.660.030.69
GSE326760.840.010.87
GSE38666_epithelia0.420.050.47
GSE38666_stroma0.280.000.28
GSE41830.360.000.36
GSE420571.070.021.09
GSE73050.810.000.81
KEGGandMetacoreDzPathwaysGEO-package0.830.010.85

KEGGandMetacoreDzPathwaysGEO.Rcheck/examples_x64/KEGGandMetacoreDzPathwaysGEO-Ex.timings:

nameusersystemelapsed
GSE11450.400.020.42
GSE119063.150.003.15
GSE14924_CD40.350.010.36
GSE14924_CD80.280.020.29
GSE167590.330.000.33
GSE194200.240.010.27
GSE201640.100.000.09
GSE227800.250.020.27
GSE238780.780.000.78
GSE24739_G00.450.010.46
GSE24739_G10.470.000.47
GSE301530.560.000.56
GSE326760.730.000.73
GSE38666_epithelia0.370.020.39
GSE38666_stroma0.240.020.25
GSE41830.310.000.31
GSE420570.950.010.97
GSE73050.700.010.71
KEGGandMetacoreDzPathwaysGEO-package0.690.020.71