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BioC experimental data: CHECK report for AmpAffyExample on moscato1

This page was generated on 2016-05-28 20:31:00 -0700 (Sat, 28 May 2016).

Package 12/292HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AmpAffyExample 1.13.0
Rafael A. Irizarry
Snapshot Date: 2016-05-28 09:20:19 -0700 (Sat, 28 May 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/AmpAffyExample
Last Changed Rev: 3763 / Revision: 3781
Last Changed Date: 2016-05-03 14:48:02 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ WARNINGS ] OK 

Summary

Package: AmpAffyExample
Version: 1.13.0
Command: rm -rf AmpAffyExample.buildbin-libdir AmpAffyExample.Rcheck && mkdir AmpAffyExample.buildbin-libdir AmpAffyExample.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=AmpAffyExample.buildbin-libdir AmpAffyExample_1.13.0.tar.gz >AmpAffyExample.Rcheck\00install.out 2>&1 && cp AmpAffyExample.Rcheck\00install.out AmpAffyExample-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=AmpAffyExample.buildbin-libdir --install="check:AmpAffyExample-install.out" --force-multiarch --no-vignettes --timings AmpAffyExample_1.13.0.tar.gz
StartedAt: 2016-05-28 13:19:48 -0700 (Sat, 28 May 2016)
EndedAt: 2016-05-28 13:22:26 -0700 (Sat, 28 May 2016)
EllapsedTime: 158.2 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: AmpAffyExample.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   rm -rf AmpAffyExample.buildbin-libdir AmpAffyExample.Rcheck && mkdir AmpAffyExample.buildbin-libdir AmpAffyExample.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=AmpAffyExample.buildbin-libdir AmpAffyExample_1.13.0.tar.gz >AmpAffyExample.Rcheck\00install.out 2>&1 && cp AmpAffyExample.Rcheck\00install.out AmpAffyExample-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=AmpAffyExample.buildbin-libdir --install="check:AmpAffyExample-install.out" --force-multiarch --no-vignettes --timings AmpAffyExample_1.13.0.tar.gz
###
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* using log directory 'D:/biocbld/bbs-3.4-data-experiment/meat/AmpAffyExample.Rcheck'
* using R version 3.3.0 (2016-05-03)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'AmpAffyExample/DESCRIPTION' ... OK
* this is package 'AmpAffyExample' version '1.13.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'AmpAffyExample' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.8Mb
  sub-directories of 1Mb or more:
    data   7.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
              old_size new_size compress
  AmpData.rda    7.8Mb    4.8Mb       xz
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'D:/biocbld/bbs-3.4-data-experiment/meat/AmpAffyExample.Rcheck/00check.log'
for details.


AmpAffyExample.Rcheck/00install.out:


install for i386

* installing *source* package 'AmpAffyExample' ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'AmpAffyExample' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AmpAffyExample' as AmpAffyExample_1.13.0.zip
* DONE (AmpAffyExample)