BioC experimental data: BUILD report for gskb on zin1

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### Running command:
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###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data gskb
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* checking for file ‘gskb/DESCRIPTION’ ... OK
* preparing ‘gskb’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Bioconductor version 3.4 (BiocInstaller 1.23.9), ?biocLite for help
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.4 (BiocInstaller 1.23.9), R 3.3.1 (2016-06-21).
Installing package(s) ‘PGSEA’
trying URL 'https://bioconductor.org/packages/3.4/bioc/src/contrib/PGSEA_1.47.0.tar.gz'
Content type 'application/x-gzip' length 1231085 bytes (1.2 MB)
==================================================
downloaded 1.2 MB

* installing *source* package ‘PGSEA’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (PGSEA)

The downloaded source packages are in
	‘/tmp/RtmpfWgN6b/downloaded_packages’
Old packages: 'BgeeDB', 'BrowserViz', 'CompQuadForm', 'EGSEA',
  'EnsDb.Hsapiens.v75', 'EnsDb.Hsapiens.v79', 'MultiAssayExperiment',
  'RnBeads', 'fastcluster', 'flowQB', 'irlba', 'partykit', 'pdInfoBuilder',
  'puma', 'recount', 'rotl', 'shinydashboard', 'shinythemes', 'spdep'
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: ‘S4Vectors’

The following objects are masked from ‘package:base’:

    colMeans, colSums, expand.grid, rowMeans, rowSums


Loading required package: KEGG.db

KEGG.db contains mappings based on older data because the original
  resource was removed from the the public domain before the most
  recent update was produced. This package should now be considered
  deprecated and future versions of Bioconductor may not have it
  available.  Users who want more current data are encouraged to look
  at the KEGGREST or reactome.db packages

Loading required package: annaffy
Warning in file(file, "rt") :
  unable to connect to 'bioinformatics.sdstate.edu' on port 80.

Error: processing vignette 'gskb.Rnw' failed with diagnostics:
 chunk 4 
Error in file(file, "rt") : cannot open the connection
Execution halted
BioC experimental data: BUILD report for gskb on zin1

Summary

Command output
