BioC experimental data: CHECK report for geuvPack on moscato1

Package: geuvPack

Version: 1.5.0

Command: rm -rf geuvPack.buildbin-libdir geuvPack.Rcheck && mkdir geuvPack.buildbin-libdir geuvPack.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=geuvPack.buildbin-libdir geuvPack_1.5.0.tar.gz >geuvPack.Rcheck\00install.out 2>&1 && cp geuvPack.Rcheck\00install.out geuvPack-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=geuvPack.buildbin-libdir --install="check:geuvPack-install.out" --force-multiarch --no-vignettes --timings geuvPack_1.5.0.tar.gz

StartedAt: 2016-09-21 14:16:13 -0700 (Wed, 21 Sep 2016)

EndedAt: 2016-09-21 14:21:31 -0700 (Wed, 21 Sep 2016)

EllapsedTime: 317.9 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: geuvPack.Rcheck

Warnings: 1

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### Running command:
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###   rm -rf geuvPack.buildbin-libdir geuvPack.Rcheck && mkdir geuvPack.buildbin-libdir geuvPack.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=geuvPack.buildbin-libdir geuvPack_1.5.0.tar.gz >geuvPack.Rcheck\00install.out 2>&1 && cp geuvPack.Rcheck\00install.out geuvPack-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=geuvPack.buildbin-libdir --install="check:geuvPack-install.out" --force-multiarch --no-vignettes --timings geuvPack_1.5.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.4-data-experiment/meat/geuvPack.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'geuvPack/DESCRIPTION' ... OK
* this is package 'geuvPack' version '1.5.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'geuvPack' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 92.5Mb
  sub-directories of 1Mb or more:
    data  92.4Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gtpath: no visible global function definition for 'is'
Undefined global functions or variables:
  is
Consider adding
  importFrom("methods", "is")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Data with usage in documentation object 'gsvs' but not in code:
  gsvs

* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
        user system elapsed
gsvs    9.98   0.22   10.20
geuFPKM 9.72   0.20   13.98
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
        user system elapsed
gsvs    9.45   0.28    9.74
geuFPKM 8.99   0.25    9.27
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  'D:/biocbld/bbs-3.4-data-experiment/meat/geuvPack.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'geuvPack' ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'geuvPack' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'geuvPack' as geuvPack_1.5.0.zip
* DONE (geuvPack)

name	user	system	elapsed
geuFPKM	9.72	0.20	13.98
gsvs	9.98	0.22	10.20
gtpath	0.02	0.00	0.02

name	user	system	elapsed
geuFPKM	8.99	0.25	9.27
gsvs	9.45	0.28	9.74
gtpath	0	0	0