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BioC experimental data: CHECK report for geneLenDataBase on zin1

This page was generated on 2016-09-21 21:56:42 -0700 (Wed, 21 Sep 2016).

Package 114/304HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneLenDataBase 1.9.0
Nadia Davidson , Anthony Hawkins
Snapshot Date: 2016-09-21 09:20:16 -0700 (Wed, 21 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/geneLenDataBase
Last Changed Rev: 3763 / Revision: 3889
Last Changed Date: 2016-05-03 14:48:02 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK [ ERROR ]
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK  ERROR  OK 

Summary

Package: geneLenDataBase
Version: 1.9.0
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.9.0.tar.gz
StartedAt: 2016-09-21 11:41:53 -0700 (Wed, 21 Sep 2016)
EndedAt: 2016-09-21 11:46:46 -0700 (Wed, 21 Sep 2016)
EllapsedTime: 293.4 seconds
RetCode: 1
Status:  ERROR 
CheckDir: geneLenDataBase.Rcheck
Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.9.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.4-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.9.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... ERROR
Running examples in ‘geneLenDataBase-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: supportedGeneIDs
> ### Title: Supported Gene IDs
> ### Aliases: supportedGeneIDs
> 
> ### ** Examples
> 
> supportedGeneIDs()
Error in `[<-.data.frame`(`*tmp*`, nrow(base) + 1, , value = c("geneSymbol",  : 
  replacement has 4 items, need 5
Calls: supportedGeneIDs -> [<- -> [<-.data.frame
Execution halted
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.4-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.

geneLenDataBase.Rcheck/00install.out:

* installing *source* package ‘geneLenDataBase’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (geneLenDataBase)

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings:

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0800.0120.091
anoCar1.genscan.LENGTH0.0640.0040.067
anoCar1.xenoRefGene.LENGTH0.9640.0000.963
anoGam1.ensGene.LENGTH0.3960.0160.411
anoGam1.geneid.LENGTH0.0440.0240.067
anoGam1.genscan.LENGTH0.0440.0160.059
apiMel1.genscan.LENGTH0.0360.0160.052
apiMel2.ensGene.LENGTH0.1000.0120.112
apiMel2.geneid.LENGTH0.0640.0080.071
apiMel2.genscan.LENGTH0.0480.0000.048
aplCal1.xenoRefGene.LENGTH0.5440.0000.548
bosTau2.geneSymbol.LENGTH0.0520.0200.072
bosTau2.geneid.LENGTH0.7640.0000.766
bosTau2.genscan.LENGTH0.0920.0080.102
bosTau2.refGene.LENGTH0.0480.0160.060
bosTau2.sgpGene.LENGTH0.1120.0000.113
bosTau3.ensGene.LENGTH0.1200.0120.132
bosTau3.geneSymbol.LENGTH0.0480.0080.055
bosTau3.geneid.LENGTH0.1840.0040.186
bosTau3.genscan.LENGTH0.0840.0000.085
bosTau3.refGene.LENGTH0.0600.0000.058
bosTau3.sgpGene.LENGTH0.1000.0240.126
bosTau4.ensGene.LENGTH0.2160.0080.224
bosTau4.geneSymbol.LENGTH0.0480.0040.054
bosTau4.genscan.LENGTH0.0720.0040.077
bosTau4.nscanGene.LENGTH0.0320.0160.046
bosTau4.refGene.LENGTH0.0240.0240.058
braFlo1.xenoRefGene.LENGTH0.8640.0000.863
caeJap1.xenoRefGene.LENGTH0.3680.0000.371
caePb1.xenoRefGene.LENGTH0.5200.0000.522
caePb2.xenoRefGene.LENGTH0.5160.0000.518
caeRem2.xenoRefGene.LENGTH0.4480.0000.445
caeRem3.xenoRefGene.LENGTH0.4320.0000.434
calJac1.genscan.LENGTH0.1080.0000.112
calJac1.nscanGene.LENGTH0.1600.0000.161
calJac1.xenoRefGene.LENGTH0.80.00.8
canFam1.ensGene.LENGTH0.1640.0000.167
canFam1.geneSymbol.LENGTH0.0080.0000.008
canFam1.genscan.LENGTH0.0640.0040.070
canFam1.nscanGene.LENGTH0.0640.0040.069
canFam1.refGene.LENGTH0.0080.0000.008
canFam1.xenoRefGene.LENGTH1.0280.0001.028
canFam2.ensGene.LENGTH0.1080.0080.117
canFam2.geneSymbol.LENGTH0.0080.0000.008
canFam2.genscan.LENGTH0.0680.0000.065
canFam2.nscanGene.LENGTH0.0720.0000.072
canFam2.refGene.LENGTH0.0080.0000.008
canFam2.xenoRefGene.LENGTH0.6880.0000.687
cavPor3.ensGene.LENGTH0.1000.0040.102
cavPor3.genscan.LENGTH0.1000.0080.107
cavPor3.nscanGene.LENGTH0.1400.0000.139
cavPor3.xenoRefGene.LENGTH0.6640.0040.667
cb1.xenoRefGene.LENGTH0.4880.0000.487
cb3.xenoRefGene.LENGTH0.4520.0000.453
ce2.geneSymbol.LENGTH0.0840.0280.112
ce2.geneid.LENGTH0.0680.0000.067
ce2.refGene.LENGTH0.0680.0400.107
ce4.geneSymbol.LENGTH0.0720.0360.107
ce4.refGene.LENGTH0.0760.0280.104
ce4.xenoRefGene.LENGTH0.0960.0000.095
ce6.ensGene.LENGTH0.0960.0120.109
ce6.geneSymbol.LENGTH0.0880.0200.111
ce6.refGene.LENGTH0.1840.0200.208
ce6.xenoRefGene.LENGTH0.0920.0000.094
ci1.geneSymbol.LENGTH0.0040.0040.008
ci1.refGene.LENGTH0.0080.0000.007
ci1.xenoRefGene.LENGTH0.1720.0000.173
ci2.ensGene.LENGTH0.0720.0040.073
ci2.geneSymbol.LENGTH0.0000.0080.007
ci2.refGene.LENGTH0.0080.0000.007
ci2.xenoRefGene.LENGTH0.3320.0000.332
danRer3.ensGene.LENGTH0.1320.0080.138
danRer3.geneSymbol.LENGTH0.0720.0120.083
danRer3.refGene.LENGTH0.0600.0160.076
danRer4.ensGene.LENGTH0.1480.0000.148
danRer4.geneSymbol.LENGTH0.0720.0160.086
danRer4.genscan.LENGTH0.1240.0000.125
danRer4.nscanGene.LENGTH0.1040.0120.115
danRer4.refGene.LENGTH0.0640.0080.075
danRer5.ensGene.LENGTH0.1360.0000.136
danRer5.geneSymbol.LENGTH0.0640.0120.075
danRer5.refGene.LENGTH0.0600.0120.072
danRer5.vegaGene.LENGTH0.0600.0120.073
danRer5.vegaPseudoGene.LENGTH0.0040.0000.004
danRer6.ensGene.LENGTH0.1200.0160.136
danRer6.geneSymbol.LENGTH0.0520.0240.074
danRer6.refGene.LENGTH0.0560.0120.066
danRer6.xenoRefGene.LENGTH0.6080.0000.610
dm1.geneSymbol.LENGTH0.0800.0240.106
dm1.genscan.LENGTH0.0360.0040.039
dm1.refGene.LENGTH0.0640.0280.091
dm2.geneSymbol.LENGTH0.1960.0160.211
dm2.geneid.LENGTH0.1240.0320.154
dm2.genscan.LENGTH0.0280.0120.039
dm2.nscanGene.LENGTH0.1000.0000.099
dm2.refGene.LENGTH0.0640.0280.093
dm3.geneSymbol.LENGTH0.1400.0000.142
dm3.nscanPasaGene.LENGTH0.0480.0320.077
dm3.refGene.LENGTH0.0680.0000.067
dp2.genscan.LENGTH0.4640.0000.465
dp2.xenoRefGene.LENGTH0.1920.0080.198
dp3.geneid.LENGTH0.0360.0240.060
dp3.genscan.LENGTH0.0360.0040.038
dp3.xenoRefGene.LENGTH0.1280.0160.144
droAna1.geneid.LENGTH0.0680.0040.073
droAna1.genscan.LENGTH0.0240.0000.024
droAna1.xenoRefGene.LENGTH0.2360.0000.237
droAna2.genscan.LENGTH0.0400.0040.046
droAna2.xenoRefGene.LENGTH0.2600.0080.266
droEre1.genscan.LENGTH0.0320.0080.040
droEre1.xenoRefGene.LENGTH0.2920.0120.301
droGri1.genscan.LENGTH0.0400.0120.053
droGri1.xenoRefGene.LENGTH0.2880.0000.287
droMoj1.geneid.LENGTH0.1320.0040.135
droMoj1.genscan.LENGTH0.0560.0000.054
droMoj1.xenoRefGene.LENGTH0.2880.0040.290
droMoj2.genscan.LENGTH0.0400.0080.050
droMoj2.xenoRefGene.LENGTH0.2760.0000.276
droPer1.genscan.LENGTH0.0400.0160.056
droPer1.xenoRefGene.LENGTH0.2880.0040.290
droSec1.genscan.LENGTH0.0360.0080.044
droSec1.xenoRefGene.LENGTH0.3120.0000.310
droSim1.geneid.LENGTH0.0560.0080.063
droSim1.genscan.LENGTH0.0320.0080.038
droSim1.xenoRefGene.LENGTH0.2440.0040.248
droVir1.geneid.LENGTH0.1680.0120.178
droVir1.genscan.LENGTH0.0520.0120.063
droVir1.xenoRefGene.LENGTH0.2520.0000.254
droVir2.genscan.LENGTH0.0400.0120.052
droVir2.xenoRefGene.LENGTH0.3640.0000.363
droYak1.geneid.LENGTH0.0560.0120.070
droYak1.genscan.LENGTH0.0320.0120.046
droYak1.xenoRefGene.LENGTH0.6360.0080.641
droYak2.genscan.LENGTH0.0360.0080.043
droYak2.xenoRefGene.LENGTH0.3040.0040.308
equCab1.geneSymbol.LENGTH0.0080.0000.007
equCab1.geneid.LENGTH0.0800.0160.098
equCab1.nscanGene.LENGTH0.0440.0160.062
equCab1.refGene.LENGTH0.0080.0000.007
equCab1.sgpGene.LENGTH0.0720.0080.079
equCab2.ensGene.LENGTH0.100.020.12
equCab2.geneSymbol.LENGTH0.0080.0040.010
equCab2.nscanGene.LENGTH0.0640.0120.077
equCab2.refGene.LENGTH0.0000.0080.010
equCab2.xenoRefGene.LENGTH0.6600.0000.658
felCat3.ensGene.LENGTH0.1200.0000.122
felCat3.geneSymbol.LENGTH0.0040.0000.006
felCat3.geneid.LENGTH1.0280.0041.029
felCat3.genscan.LENGTH0.1120.0120.124
felCat3.nscanGene.LENGTH0.1000.0080.107
felCat3.refGene.LENGTH0.0080.0000.006
felCat3.sgpGene.LENGTH0.1440.0000.146
felCat3.xenoRefGene.LENGTH1.8000.0041.807
fr1.ensGene.LENGTH0.0840.0000.084
fr1.genscan.LENGTH0.0520.0040.057
fr2.ensGene.LENGTH0.1320.0160.146
galGal2.ensGene.LENGTH0.0560.0000.055
galGal2.geneSymbol.LENGTH0.0200.0040.024
galGal2.geneid.LENGTH0.0560.0040.058
galGal2.genscan.LENGTH0.0520.0240.074
galGal2.refGene.LENGTH0.0200.0000.022
galGal2.sgpGene.LENGTH0.0560.0160.073
galGal3.ensGene.LENGTH0.0720.0080.079
galGal3.geneSymbol.LENGTH0.0200.0040.023
galGal3.genscan.LENGTH0.0680.0040.071
galGal3.nscanGene.LENGTH0.1360.0000.134
galGal3.refGene.LENGTH0.0200.0000.021
galGal3.xenoRefGene.LENGTH0.4960.0000.497
gasAcu1.ensGene.LENGTH0.1080.0080.116
gasAcu1.nscanGene.LENGTH0.1000.0200.119
hg16.acembly.LENGTH0.4640.0000.462
hg16.ensGene.LENGTH0.5240.0400.567
hg16.exoniphy.LENGTH0.2160.0160.232
hg16.geneSymbol.LENGTH0.1200.0040.123
hg16.geneid.LENGTH0.0520.0280.080
hg16.genscan.LENGTH0.0720.0040.076
hg16.knownGene.LENGTH0.1240.0240.149
hg16.refGene.LENGTH0.1080.0080.119
hg16.sgpGene.LENGTH0.0600.0040.066
hg17.acembly.LENGTH0.4320.0640.501
hg17.acescan.LENGTH0.0120.0000.019
hg17.ccdsGene.LENGTH0.0320.0040.044
hg17.ensGene.LENGTH0.1320.0120.157
hg17.exoniphy.LENGTH0.5160.0000.516
hg17.geneSymbol.LENGTH0.1000.0080.106
hg17.geneid.LENGTH0.0800.0040.086
hg17.genscan.LENGTH0.0600.0120.068
hg17.knownGene.LENGTH0.1200.0080.127
hg17.refGene.LENGTH0.1080.0000.107
hg17.sgpGene.LENGTH0.0800.0040.085
hg17.vegaGene.LENGTH0.0560.0040.060
hg17.vegaPseudoGene.LENGTH0.0280.0000.025
hg17.xenoRefGene.LENGTH0.2360.0000.235
hg18.acembly.LENGTH0.5760.0000.577
hg18.acescan.LENGTH0.0080.0040.014
hg18.ccdsGene.LENGTH0.0480.0000.050
hg18.ensGene.LENGTH0.4640.0080.470
hg18.exoniphy.LENGTH0.4520.0000.450
hg18.geneSymbol.LENGTH0.1040.0040.109
hg18.geneid.LENGTH0.0880.0040.091
hg18.genscan.LENGTH0.0680.0040.070
hg18.knownGene.LENGTH0.2480.0120.258
hg18.knownGeneOld3.LENGTH0.0720.0160.090
hg18.refGene.LENGTH0.1240.0000.124
hg18.sgpGene.LENGTH0.0840.0120.099
hg18.sibGene.LENGTH1.0720.0081.080
hg18.xenoRefGene.LENGTH0.4000.0000.398
hg19.ccdsGene.LENGTH0.0520.0040.059
hg19.ensGene.LENGTH0.3360.0040.340
hg19.exoniphy.LENGTH0.4080.0040.411
hg19.geneSymbol.LENGTH0.2080.0080.215
hg19.knownGene.LENGTH0.1840.0160.199
hg19.nscanGene.LENGTH0.1520.0000.153
hg19.refGene.LENGTH0.1000.0080.111
hg19.xenoRefGene.LENGTH0.4280.0000.430
loxAfr3.xenoRefGene.LENGTH0.9600.0040.969
mm7.ensGene.LENGTH0.5960.0040.602
mm7.geneSymbol.LENGTH0.0960.0000.097
mm7.geneid.LENGTH0.0920.0040.092
mm7.genscan.LENGTH0.0600.0040.067
mm7.knownGene.LENGTH0.1040.0000.103
mm7.refGene.LENGTH0.0880.0000.091
mm7.sgpGene.LENGTH0.0800.0080.089
mm7.xenoRefGene.LENGTH0.360.000.36
mm8.ccdsGene.LENGTH0.0240.0080.032
mm8.ensGene.LENGTH0.0840.0040.088
mm8.geneSymbol.LENGTH0.0840.0000.084
mm8.geneid.LENGTH0.0840.0080.092
mm8.genscan.LENGTH0.0640.0000.061
mm8.knownGene.LENGTH0.1000.0000.101
mm8.nscanGene.LENGTH0.0560.0040.064
mm8.refGene.LENGTH0.0880.0000.090
mm8.sgpGene.LENGTH0.0760.0160.092
mm8.sibGene.LENGTH0.3280.0040.332
mm8.xenoRefGene.LENGTH0.3720.0160.390
mm9.acembly.LENGTH0.3360.0000.336
mm9.ccdsGene.LENGTH0.0400.0040.043
mm9.ensGene.LENGTH0.1640.0080.183
mm9.exoniphy.LENGTH0.5440.0040.548
mm9.geneSymbol.LENGTH0.3080.0000.310
mm9.geneid.LENGTH0.1000.0080.106
mm9.genscan.LENGTH0.0680.0040.070
mm9.knownGene.LENGTH0.120.020.14
mm9.nscanGene.LENGTH0.0640.0000.065
mm9.refGene.LENGTH0.0960.0000.095
mm9.sgpGene.LENGTH0.1000.0000.102
mm9.xenoRefGene.LENGTH0.4240.0160.438
monDom1.genscan.LENGTH0.1560.0040.160
monDom4.ensGene.LENGTH0.0880.0040.090
monDom4.geneSymbol.LENGTH0.0000.0040.005
monDom4.genscan.LENGTH0.0560.0240.081
monDom4.nscanGene.LENGTH0.0680.0160.084
monDom4.refGene.LENGTH0.0080.0000.005
monDom4.xenoRefGene.LENGTH0.5640.0000.565
monDom5.ensGene.LENGTH0.6360.0000.634
monDom5.geneSymbol.LENGTH0.0040.0000.005
monDom5.genscan.LENGTH0.0520.0000.055
monDom5.nscanGene.LENGTH0.1080.0000.109
monDom5.refGene.LENGTH0.0040.0000.005
monDom5.xenoRefGene.LENGTH0.6640.0000.663
ornAna1.ensGene.LENGTH0.1240.0040.127
ornAna1.geneSymbol.LENGTH0.0040.0000.003
ornAna1.refGene.LENGTH0.0000.0000.004
ornAna1.xenoRefGene.LENGTH0.6360.0040.643
oryLat2.ensGene.LENGTH0.1200.0080.129
oryLat2.geneSymbol.LENGTH0.0080.0000.007
oryLat2.refGene.LENGTH0.0000.0040.006
oryLat2.xenoRefGene.LENGTH0.6200.0480.672
panTro1.ensGene.LENGTH0.1960.0000.198
panTro1.geneid.LENGTH0.0640.0160.080
panTro1.genscan.LENGTH0.0600.0080.069
panTro1.xenoRefGene.LENGTH0.1280.0240.150
panTro2.ensGene.LENGTH0.1240.0160.140
panTro2.geneSymbol.LENGTH0.1120.0080.120
panTro2.genscan.LENGTH0.0680.0000.068
panTro2.nscanGene.LENGTH0.0680.0000.070
panTro2.refGene.LENGTH0.1120.0040.115
panTro2.xenoRefGene.LENGTH0.6000.0040.606
petMar1.xenoRefGene.LENGTH0.4040.0080.414
ponAbe2.ensGene.LENGTH0.1000.0040.104
ponAbe2.geneSymbol.LENGTH0.0160.0000.018
ponAbe2.genscan.LENGTH0.0680.0000.066
ponAbe2.nscanGene.LENGTH0.0600.0040.065
ponAbe2.refGene.LENGTH0.0080.0080.017
ponAbe2.xenoRefGene.LENGTH0.7880.0000.787
priPac1.xenoRefGene.LENGTH0.6320.0000.633
rheMac2.ensGene.LENGTH0.1440.0080.152
rheMac2.geneSymbol.LENGTH0.0080.0000.008
rheMac2.geneid.LENGTH0.0800.0080.088
rheMac2.nscanGene.LENGTH0.0680.0000.067
rheMac2.refGene.LENGTH0.0040.0040.007
rheMac2.sgpGene.LENGTH0.0760.0080.085
rheMac2.xenoRefGene.LENGTH0.6360.0000.637
rn3.ensGene.LENGTH0.1240.0080.133
rn3.geneSymbol.LENGTH0.0680.0160.084
rn3.geneid.LENGTH0.1520.0000.152
rn3.genscan.LENGTH0.0720.0000.073
rn3.knownGene.LENGTH0.0240.0120.036
rn3.nscanGene.LENGTH0.0600.0040.063
rn3.refGene.LENGTH0.0680.0080.076
rn3.sgpGene.LENGTH0.0680.0000.067
rn3.xenoRefGene.LENGTH0.6120.0040.615
rn4.ensGene.LENGTH0.5960.0000.594
rn4.geneSymbol.LENGTH0.0600.0160.076
rn4.geneid.LENGTH0.1000.0040.102
rn4.genscan.LENGTH0.0640.0040.068
rn4.knownGene.LENGTH0.0320.0040.035
rn4.nscanGene.LENGTH0.0760.0080.086
rn4.refGene.LENGTH0.0600.0120.073
rn4.sgpGene.LENGTH0.0920.0040.096
rn4.xenoRefGene.LENGTH0.3680.0000.365
sacCer1.ensGene.LENGTH0.0120.0160.028
sacCer2.ensGene.LENGTH0.0240.0040.027
strPur1.geneSymbol.LENGTH0.0040.0040.006
strPur1.genscan.LENGTH0.0680.0000.070
strPur1.refGene.LENGTH0.0040.0000.007
strPur1.xenoRefGene.LENGTH0.5520.0000.555
strPur2.geneSymbol.LENGTH0.0040.0000.005
strPur2.genscan.LENGTH0.1080.0000.109
strPur2.refGene.LENGTH0.0040.0000.006
strPur2.xenoRefGene.LENGTH0.7680.0000.774