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BioC experimental data: BUILD report for SomaticCancerAlterations on moscato1

This page was generated on 2016-09-21 21:57:17 -0700 (Wed, 21 Sep 2016).

Package 274/304HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SomaticCancerAlterations 1.9.2
Julian Gehring
Snapshot Date: 2016-09-21 09:20:16 -0700 (Wed, 21 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/SomaticCancerAlterations
Last Changed Rev: 3773 / Revision: 3889
Last Changed Date: 2016-05-15 13:21:08 -0700 (Sun, 15 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  ERROR  skipped 
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: SomaticCancerAlterations
Version: 1.9.2
Command: chmod a+r SomaticCancerAlterations -R && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SomaticCancerAlterations
StartedAt: 2016-09-21 11:31:13 -0700 (Wed, 21 Sep 2016)
EndedAt: 2016-09-21 11:33:05 -0700 (Wed, 21 Sep 2016)
EllapsedTime: 111.5 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   chmod a+r SomaticCancerAlterations -R && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SomaticCancerAlterations
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* checking for file 'SomaticCancerAlterations/DESCRIPTION' ... OK
* preparing 'SomaticCancerAlterations':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"D:/biocbld/bbs-3.4-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Quitting from lines 340-345 (SomaticCancerAlterations-html.Rhtml) 
Error: processing vignette 'SomaticCancerAlterations-html.Rhtml' failed with diagnostics:
'elementLengths' is defunct.
Use 'elementNROWS' instead.
See help("Defunct")
Execution halted