BioC experimental data: CHECK report for KEGGandMetacoreDzPathwaysGEO on moscato1

Package: KEGGandMetacoreDzPathwaysGEO

Version: 0.107.0

Command: rm -rf KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO.Rcheck && mkdir KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO_0.107.0.tar.gz >KEGGandMetacoreDzPathwaysGEO.Rcheck\00install.out 2>&1 && cp KEGGandMetacoreDzPathwaysGEO.Rcheck\00install.out KEGGandMetacoreDzPathwaysGEO-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=KEGGandMetacoreDzPathwaysGEO.buildbin-libdir --install="check:KEGGandMetacoreDzPathwaysGEO-install.out" --force-multiarch --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_0.107.0.tar.gz

StartedAt: 2016-09-21 14:44:33 -0700 (Wed, 21 Sep 2016)

EndedAt: 2016-09-21 14:48:02 -0700 (Wed, 21 Sep 2016)

EllapsedTime: 209.6 seconds

RetCode: 0

Status:  OK

CheckDir: KEGGandMetacoreDzPathwaysGEO.Rcheck

Warnings: 0

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### Running command:
###
###   rm -rf KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO.Rcheck && mkdir KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO_0.107.0.tar.gz >KEGGandMetacoreDzPathwaysGEO.Rcheck\00install.out 2>&1 && cp KEGGandMetacoreDzPathwaysGEO.Rcheck\00install.out KEGGandMetacoreDzPathwaysGEO-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=KEGGandMetacoreDzPathwaysGEO.buildbin-libdir --install="check:KEGGandMetacoreDzPathwaysGEO-install.out" --force-multiarch --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_0.107.0.tar.gz
###
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* using log directory 'D:/biocbld/bbs-3.4-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'KEGGandMetacoreDzPathwaysGEO/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'KEGGandMetacoreDzPathwaysGEO' version '0.107.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'KEGGandMetacoreDzPathwaysGEO' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 98.7Mb
  sub-directories of 1Mb or more:
    data  98.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
GSE14924_CD4 0.56   0.02    6.43
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.4-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'KEGGandMetacoreDzPathwaysGEO' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'KEGGandMetacoreDzPathwaysGEO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'KEGGandMetacoreDzPathwaysGEO' as KEGGandMetacoreDzPathwaysGEO_0.107.0.zip
* DONE (KEGGandMetacoreDzPathwaysGEO)

name	user	system	elapsed
GSE1145	0.45	0.01	0.47
GSE11906	3.50	0.07	3.56
GSE14924_CD4	0.39	0.00	0.39
GSE14924_CD8	0.36	0.00	0.36
GSE16759	0.39	0.01	0.41
GSE19420	0.31	0.00	0.31
GSE20164	0.10	0.00	0.11
GSE22780	0.28	0.03	0.31
GSE23878	0.91	0.02	0.94
GSE24739_G0	0.54	0.00	0.54
GSE24739_G1	0.55	0.00	0.55
GSE30153	0.65	0.00	0.66
GSE32676	0.83	0.00	0.82
GSE38666_epithelia	0.45	0.00	0.45
GSE38666_stroma	0.28	0.00	0.29
GSE4183	0.36	0.00	0.35
GSE42057	1.10	0.01	1.11
GSE7305	0.84	0.02	0.86
KEGGandMetacoreDzPathwaysGEO-package	0.87	0.00	0.87

name	user	system	elapsed
GSE1145	0.41	0.03	0.43
GSE11906	3.19	0.04	3.26
GSE14924_CD4	0.56	0.02	6.43
GSE14924_CD8	0.31	0.02	0.32
GSE16759	0.33	0.01	0.35
GSE19420	0.27	0.00	0.26
GSE20164	0.09	0.00	0.10
GSE22780	0.23	0.03	0.26
GSE23878	0.77	0.05	0.81
GSE24739_G0	0.50	0.03	0.53
GSE24739_G1	0.48	0.02	0.50
GSE30153	0.62	0.00	0.63
GSE32676	0.77	0.04	0.81
GSE38666_epithelia	0.37	0.05	0.42
GSE38666_stroma	0.28	0.00	0.28
GSE4183	0.33	0.00	0.33
GSE42057	1.05	0.02	1.06
GSE7305	0.75	0.01	0.76
KEGGandMetacoreDzPathwaysGEO-package	0.74	0.02	0.77