variancePartition 1.3.10
Gabriel E. Hoffman
| Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/variancePartition | | Last Changed Rev: 120688 / Revision: 121152 | | Last Changed Date: 2016-09-02 08:54:07 -0700 (Fri, 02 Sep 2016) |
| zin1 | Linux (Ubuntu 16.04 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf variancePartition.buildbin-libdir variancePartition.Rcheck && mkdir variancePartition.buildbin-libdir variancePartition.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=variancePartition.buildbin-libdir variancePartition_1.3.10.tar.gz >variancePartition.Rcheck\00install.out 2>&1 && cp variancePartition.Rcheck\00install.out variancePartition-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=variancePartition.buildbin-libdir --install="check:variancePartition-install.out" --force-multiarch --no-vignettes --timings variancePartition_1.3.10.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/variancePartition.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'variancePartition/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'variancePartition' version '1.3.10'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'variancePartition' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
fitVarPartModel-method 21.20 2.01 42.84
extractVarPart 12.20 0.66 29.91
varPartConfInf 5.27 0.05 24.39
getVarianceComponents 4.18 0.75 15.61
residuals-VarParFitList-method 2.47 0.44 12.99
fitExtractVarPartModel-method 1.14 0.19 28.30
plotCorrStructure 1.14 0.08 11.46
plotVarPart-method 0.87 0.05 14.28
plotPercentBars 0.86 0.04 13.76
sortCols-method 0.80 0.04 14.66
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
fitVarPartModel-method 26.02 2.09 46.14
extractVarPart 13.49 0.81 30.29
varPartConfInf 6.27 0.08 28.88
getVarianceComponents 4.94 0.97 18.58
residuals-VarParFitList-method 2.95 0.66 16.24
fitExtractVarPartModel-method 1.16 0.11 25.46
plotCorrStructure 1.10 0.08 13.13
plotPercentBars 0.92 0.09 16.92
plotVarPart-method 0.86 0.06 16.67
sortCols-method 0.83 0.01 15.90
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
install for i386
* installing *source* package 'variancePartition' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'variancePartition' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'variancePartition' as variancePartition_1.3.10.zip
* DONE (variancePartition)