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BioC 3.4: INSTALL report for simpleaffy on zin1

This page was generated on 2016-09-21 03:35:43 -0700 (Wed, 21 Sep 2016).

Package 1122/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
simpleaffy 2.49.0
Crispin Miller
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/simpleaffy
Last Changed Rev: 117081 / Revision: 121152
Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64 [ OK ] OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: simpleaffy
Version: 2.49.0
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD INSTALL simpleaffy
StartedAt: 2016-09-19 20:10:47 -0700 (Mon, 19 Sep 2016)
EndedAt: 2016-09-19 20:10:58 -0700 (Mon, 19 Sep 2016)
EllapsedTime: 10.7 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD INSTALL simpleaffy
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.4-bioc/R/library’
* installing *source* package ‘simpleaffy’ ...
** libs
gcc -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c simpleaffy.c -o simpleaffy.o
simpleaffy.c: In function ‘bgmas’:
simpleaffy.c:440:30: warning: passing argument 1 of ‘REprintf’ from incompatible pointer type [-Wincompatible-pointer-types]
     if(gn >= ngrid) REprintf(stderr,"Really ouch! %d %d\n",gn,ends[gn]);
                              ^
In file included from /home/biocbuild/bbs-3.4-bioc/R/include/R.h:72:0,
                 from simpleaffy.c:5:
/home/biocbuild/bbs-3.4-bioc/R/include/R_ext/Print.h:40:6: note: expected ‘const char *’ but argument is of type ‘struct _IO_FILE *’
 void REprintf(const char *, ...);
      ^
gcc -shared -L/home/biocbuild/bbs-3.4-bioc/R/lib -L/usr/local/lib -o simpleaffy.so simpleaffy.o -L/home/biocbuild/bbs-3.4-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.4-bioc/R/library/simpleaffy/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (simpleaffy)