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BioC 3.4: BUILD report for saps on morelia

This page was generated on 2016-09-21 03:53:57 -0700 (Wed, 21 Sep 2016).

Package 1080/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
saps 2.5.2
Daniel Schmolze
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/saps
Last Changed Rev: 117512 / Revision: 121152
Last Changed Date: 2016-05-15 13:14:22 -0700 (Sun, 15 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  ERROR  skipped 
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  ERROR  skipped  skipped 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: saps
Version: 2.5.2
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data saps
StartedAt: 2016-09-20 00:38:02 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 00:38:20 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 17.8 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data saps
###
##############################################################################
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* checking for file ‘saps/DESCRIPTION’ ... OK
* preparing ‘saps’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: survival
Calculating concordance index...done.
Using gene set set1, size = 5
gene set #1 of 2
Calculating P_pure...done.
Calculating P_random...done.
Calculating P_enrichment...Quitting from lines 76-77 (saps.Rmd) 
Error: processing vignette 'saps.Rmd' failed with diagnostics:
incorrect number of dimensions
Execution halted