Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O [P] Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.4: CHECK report for plrs on moscato1

This page was generated on 2016-09-21 03:44:29 -0700 (Wed, 21 Sep 2016).

Package 908/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
plrs 1.13.0
Gwenael G.R. Leday to
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/plrs
Last Changed Rev: 117081 / Revision: 121152
Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: plrs
Version: 1.13.0
Command: rm -rf plrs.buildbin-libdir plrs.Rcheck && mkdir plrs.buildbin-libdir plrs.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=plrs.buildbin-libdir plrs_1.13.0.tar.gz >plrs.Rcheck\00install.out 2>&1 && cp plrs.Rcheck\00install.out plrs-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=plrs.buildbin-libdir --install="check:plrs-install.out" --force-multiarch --no-vignettes --timings plrs_1.13.0.tar.gz
StartedAt: 2016-09-20 14:06:24 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 14:08:16 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 112.1 seconds
RetCode: 0
Status:  OK  
CheckDir: plrs.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf plrs.buildbin-libdir plrs.Rcheck && mkdir plrs.buildbin-libdir plrs.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=plrs.buildbin-libdir plrs_1.13.0.tar.gz >plrs.Rcheck\00install.out 2>&1 && cp plrs.Rcheck\00install.out plrs-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=plrs.buildbin-libdir --install="check:plrs-install.out" --force-multiarch --no-vignettes --timings plrs_1.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/plrs.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'plrs/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'plrs' version '1.13.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'plrs' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'methods'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'mvtnorm' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
':::' call which should be '::': 'CGHbase:::calls'
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
            user system elapsed
plrs.series 7.98   0.03    8.27
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
            user system elapsed
plrs.series 9.08      0    9.08
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbld/bbs-3.4-bioc/meat/plrs.Rcheck/00check.log'
for details.


plrs.Rcheck/00install.out:


install for i386

* installing *source* package 'plrs' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'model.matrix' from package 'stats' in package 'plrs'
Creating a generic function for 'knots' from package 'stats' in package 'plrs'
Creating a generic function for 'print' from package 'base' in package 'plrs'
Creating a generic function for 'effects' from package 'stats' in package 'plrs'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'plrs' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'plrs' as plrs_1.13.0.zip
* DONE (plrs)

plrs.Rcheck/examples_i386/plrs-Ex.timings:

nameusersystemelapsed
criteria0.360.000.38
modify.conf000
neveCN170.160.030.19
neveGE170.060.000.06
plrs0.000.010.02
plrs.cb1.610.162.32
plrs.series7.980.038.27
plrs.sim0.040.000.03
plrs.test0.010.000.02

plrs.Rcheck/examples_x64/plrs-Ex.timings:

nameusersystemelapsed
criteria0.370.000.39
modify.conf0.010.000.02
neveCN170.090.030.12
neveGE170.050.000.04
plrs0.000.020.02
plrs.cb2.210.223.10
plrs.series9.080.009.08
plrs.sim0.030.000.03
plrs.test0.020.000.01