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BioC 3.4: CHECK report for multiClust on morelia

This page was generated on 2016-09-21 03:55:01 -0700 (Wed, 21 Sep 2016).

Package 792/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
multiClust 1.3.0
Nathan Lawlor
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/multiClust
Last Changed Rev: 119624 / Revision: 121152
Last Changed Date: 2016-07-25 15:17:03 -0700 (Mon, 25 Jul 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK NO, built version is LOWER than in internal repository!!!
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK  OK  OK NO, built version is LOWER than in internal repository!!!
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK [ OK ] OK NO, built version is LOWER than in internal repository!!!

Summary

Package: multiClust
Version: 1.3.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings multiClust_1.3.0.tar.gz
StartedAt: 2016-09-20 09:43:30 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 09:44:49 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 78.6 seconds
RetCode: 0
Status:  OK 
CheckDir: multiClust.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings multiClust_1.3.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.4-bioc/meat/multiClust.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘multiClust/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘multiClust’ version ‘1.3.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘multiClust’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
cluster_analysis 8.859  0.082   8.618
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

multiClust.Rcheck/00install.out:

* installing *source* package ‘multiClust’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (multiClust)

multiClust.Rcheck/multiClust-Ex.timings:

nameusersystemelapsed
WriteMatrixToFile0.0210.0030.024
avg_probe_exp1.5100.0271.565
cluster_analysis8.8590.0828.618
input_file0.1740.0020.175
nor.min.max0.0050.0010.005
number_clusters0.1900.0020.193
number_probes0.3680.0040.372
probe_ranking0.3660.0050.385
surv_analysis1.0780.0121.266