Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L [M] N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.4: CHECK report for miRNAmeConverter on moscato1

This page was generated on 2016-09-21 03:48:08 -0700 (Wed, 21 Sep 2016).

Package 757/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
miRNAmeConverter 1.1.4
Stefan Haunsberger
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/miRNAmeConverter
Last Changed Rev: 118768 / Revision: 121152
Last Changed Date: 2016-06-20 06:46:35 -0700 (Mon, 20 Jun 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: miRNAmeConverter
Version: 1.1.4
Command: rm -rf miRNAmeConverter.buildbin-libdir miRNAmeConverter.Rcheck && mkdir miRNAmeConverter.buildbin-libdir miRNAmeConverter.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=miRNAmeConverter.buildbin-libdir miRNAmeConverter_1.1.4.tar.gz >miRNAmeConverter.Rcheck\00install.out 2>&1 && cp miRNAmeConverter.Rcheck\00install.out miRNAmeConverter-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=miRNAmeConverter.buildbin-libdir --install="check:miRNAmeConverter-install.out" --force-multiarch --no-vignettes --timings miRNAmeConverter_1.1.4.tar.gz
StartedAt: 2016-09-20 12:21:24 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 12:24:01 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 156.4 seconds
RetCode: 0
Status:  OK  
CheckDir: miRNAmeConverter.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf miRNAmeConverter.buildbin-libdir miRNAmeConverter.Rcheck && mkdir miRNAmeConverter.buildbin-libdir miRNAmeConverter.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=miRNAmeConverter.buildbin-libdir miRNAmeConverter_1.1.4.tar.gz >miRNAmeConverter.Rcheck\00install.out 2>&1 && cp miRNAmeConverter.Rcheck\00install.out miRNAmeConverter-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=miRNAmeConverter.buildbin-libdir --install="check:miRNAmeConverter-install.out" --force-multiarch --no-vignettes --timings miRNAmeConverter_1.1.4.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/miRNAmeConverter.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'miRNAmeConverter/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'miRNAmeConverter' version '1.1.4'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'miRNAmeConverter' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ...It is recommended to use 'given' instead of 'middle'.
 OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
MiRNANameConverter,ANY: no visible global function definition for 'new'
Undefined global functions or variables:
  new
Consider adding
  importFrom("methods", "new")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                              user system elapsed
MiRNANameConverter-ANY-method 0.11   0.06   19.49
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.4-bioc/meat/miRNAmeConverter.Rcheck/00check.log'
for details.


miRNAmeConverter.Rcheck/00install.out:


install for i386

* installing *source* package 'miRNAmeConverter' ...
It is recommended to use 'given' instead of 'middle'.
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function from function 'MiRNANameConverter' in package 'miRNAmeConverter'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'miRNAmeConverter' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'miRNAmeConverter' as miRNAmeConverter_1.1.4.zip
* DONE (miRNAmeConverter)

miRNAmeConverter.Rcheck/examples_i386/miRNAmeConverter-Ex.timings:

nameusersystemelapsed
MiRNANameConverter-ANY-method 0.11 0.0619.49
assessVersion0.330.000.33
checkMiRNAName0.20.00.2
currentVersion0.130.000.12
miRNAmeConverter1.030.001.03
nOrganisms0.130.000.12
nTotalEntries0.140.000.14
saveResults1.390.021.42
translateMiRNAName1.460.011.48
validOrganisms0.130.000.13
validVersions0.140.000.14

miRNAmeConverter.Rcheck/examples_x64/miRNAmeConverter-Ex.timings:

nameusersystemelapsed
MiRNANameConverter-ANY-method0.100.110.20
assessVersion0.310.000.31
checkMiRNAName0.200.000.21
currentVersion0.140.000.14
miRNAmeConverter1.120.001.12
nOrganisms0.130.000.12
nTotalEntries0.140.000.14
saveResults1.510.011.56
translateMiRNAName1.480.001.48
validOrganisms0.140.000.14
validVersions0.140.000.14