BioC 3.4: CHECK report for crossmeta on morelia

Package: crossmeta

Version: 0.99.12

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings crossmeta_0.99.12.tar.gz

StartedAt: 2016-09-20 05:11:39 -0700 (Tue, 20 Sep 2016)

EndedAt: 2016-09-20 05:13:54 -0700 (Tue, 20 Sep 2016)

EllapsedTime: 135.0 seconds

RetCode: 0

Status:  OK

CheckDir: crossmeta.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings crossmeta_0.99.12.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.4-bioc/meat/crossmeta.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘crossmeta/DESCRIPTION’ ... OK
* this is package ‘crossmeta’ version ‘0.99.12’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘crossmeta’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
setup_prev 45.478  0.139  45.672
diff_expr  30.742  0.314  31.118
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘crossmeta’ ...
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (crossmeta)

name	user	system	elapsed
contribute	0.773	0.021	0.936
diff_expr	30.742	0.314	31.118
es_meta	1.758	0.087	1.884
get_raw	0.321	0.025	4.965
load_diff	0.176	0.003	0.246
load_raw	0.202	0.004	0.206
open_raw_illum	0.011	0.000	0.011
setup_prev	45.478	0.139	45.672
symbol_annot	1.654	0.065	1.746