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BioC 3.4: CHECK report for RankProd on moscato1

This page was generated on 2016-09-21 03:41:32 -0700 (Wed, 21 Sep 2016).

Package 970/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RankProd 2.99.3
Francesco Del Carratore
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RankProd
Last Changed Rev: 121089 / Revision: 121152
Last Changed Date: 2016-09-17 10:55:32 -0700 (Sat, 17 Sep 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  OK YES, new version is higher than in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RankProd
Version: 2.99.3
Command: rm -rf RankProd.buildbin-libdir RankProd.Rcheck && mkdir RankProd.buildbin-libdir RankProd.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RankProd.buildbin-libdir RankProd_2.99.3.tar.gz >RankProd.Rcheck\00install.out 2>&1 && cp RankProd.Rcheck\00install.out RankProd-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=RankProd.buildbin-libdir --install="check:RankProd-install.out" --force-multiarch --no-vignettes --timings RankProd_2.99.3.tar.gz
StartedAt: 2016-09-20 14:48:24 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 14:49:36 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 72.0 seconds
RetCode: 0
Status:  OK  
CheckDir: RankProd.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   rm -rf RankProd.buildbin-libdir RankProd.Rcheck && mkdir RankProd.buildbin-libdir RankProd.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RankProd.buildbin-libdir RankProd_2.99.3.tar.gz >RankProd.Rcheck\00install.out 2>&1 && cp RankProd.Rcheck\00install.out RankProd-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=RankProd.buildbin-libdir --install="check:RankProd-install.out" --force-multiarch --no-vignettes --timings RankProd_2.99.3.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/RankProd.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RankProd/DESCRIPTION' ... OK
* this is package 'RankProd' version '2.99.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RankProd' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

RankProd.Rcheck/00install.out:


install for i386

* installing *source* package 'RankProd' ...
** R
** data
** inst
** preparing package for lazy loading
[1] "this is the new version of the RankProd package"
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'RankProd' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RankProd' as RankProd_2.99.3.zip
* DONE (RankProd)

RankProd.Rcheck/examples_i386/RankProd-Ex.timings:

nameusersystemelapsed
Apples0.020.020.03
RP0.310.030.35
RP.advance2.780.032.81
RPadvance1.570.001.57
RSadvance1.20.01.2
RankProducts0.580.000.58
plotRP0.310.000.31
topGene0.710.010.72

RankProd.Rcheck/examples_x64/RankProd-Ex.timings:

nameusersystemelapsed
Apples0.030.000.04
RP0.420.000.42
RP.advance3.260.013.27
RPadvance1.900.021.92
RSadvance1.440.001.43
RankProducts0.820.000.83
plotRP0.420.000.42
topGene1.050.001.05