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BioC 3.4: CHECK report for Prize on moscato1

This page was generated on 2016-09-21 03:47:18 -0700 (Wed, 21 Sep 2016).

Package 921/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Prize 1.3.0
Daryanaz Dargahi
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Prize
Last Changed Rev: 117081 / Revision: 121152
Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: Prize
Version: 1.3.0
Command: rm -rf Prize.buildbin-libdir Prize.Rcheck && mkdir Prize.buildbin-libdir Prize.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Prize.buildbin-libdir Prize_1.3.0.tar.gz >Prize.Rcheck\00install.out 2>&1 && cp Prize.Rcheck\00install.out Prize-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=Prize.buildbin-libdir --install="check:Prize-install.out" --force-multiarch --no-vignettes --timings Prize_1.3.0.tar.gz
StartedAt: 2016-09-20 14:11:46 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 14:15:02 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 196.3 seconds
RetCode: 0
Status:  OK  
CheckDir: Prize.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf Prize.buildbin-libdir Prize.Rcheck && mkdir Prize.buildbin-libdir Prize.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Prize.buildbin-libdir Prize_1.3.0.tar.gz >Prize.Rcheck\00install.out 2>&1 && cp Prize.Rcheck\00install.out Prize-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=Prize.buildbin-libdir --install="check:Prize-install.out" --force-multiarch --no-vignettes --timings Prize_1.3.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/Prize.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Prize/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Prize' version '1.3.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Prize' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
              user system elapsed
Prize-package 6.55   0.03    7.14
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
Prize-package       8.27   0.01    8.85
gaggregate          6.14   0.02    6.16
saaty_inconsistency 5.22   0.00    5.22
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Prize.Rcheck/00install.out:


install for i386

* installing *source* package 'Prize' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'Prize' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Prize' as Prize_1.3.0.zip
* DONE (Prize)

Prize.Rcheck/examples_i386/Prize-Ex.timings:

nameusersystemelapsed
AIJ2.500.012.51
AIP1.590.001.59
CI2.180.002.18
GCR2.330.002.32
ICR3.690.003.70
IP3.840.023.85
Prize-package6.550.037.14
RM0.390.000.39
ahmatrix000
ahp0.390.000.39
ahp_matrix000
ahp_plot3.170.003.17
ahp_weights2.920.002.92
ahplot0.030.000.03
crplot0.230.000.23
dplot0.160.000.16
gaggregate4.510.004.51
pipeline2.980.002.98
rainbow_plot3.040.003.04
rainbowplot0.20.00.2
rating0.750.000.75
saaty_inconsistency3.730.003.75
simulation3.050.003.04
weight0.880.000.87
weight_plot3.210.023.23
wplot0.410.000.41

Prize.Rcheck/examples_x64/Prize-Ex.timings:

nameusersystemelapsed
AIJ303
AIP2.020.002.06
CI2.980.002.98
GCR2.750.002.74
ICR4.690.014.71
IP4.640.024.65
Prize-package8.270.018.85
RM0.480.000.48
ahmatrix000
ahp0.510.000.51
ahp_matrix0.020.000.02
ahp_plot3.870.023.88
ahp_weights3.570.003.59
ahplot0.010.010.03
crplot0.270.020.28
dplot0.220.000.22
gaggregate6.140.026.16
pipeline3.960.003.97
rainbow_plot4.050.004.04
rainbowplot0.240.000.25
rating0.960.000.95
saaty_inconsistency5.220.005.22
simulation3.510.003.51
weight0.940.000.94
weight_plot3.590.003.59
wplot0.420.010.44