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BioC 3.4: BUILD BIN report for Linnorm on morelia

This page was generated on 2016-09-21 03:55:51 -0700 (Wed, 21 Sep 2016).

Package 657/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Linnorm 1.1.14
Ken Shun Hang Yip
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Linnorm
Last Changed Rev: 120534 / Revision: 121152
Last Changed Date: 2016-08-27 01:03:03 -0700 (Sat, 27 Aug 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: Linnorm
Version: 1.1.14
Command: rm -rf Linnorm.buildbin-libdir && mkdir Linnorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Linnorm_1.1.14.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Linnorm.buildbin-libdir
StartedAt: 2016-09-20 15:08:04 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 15:08:14 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 10.6 seconds
RetCode: 0
Status:  OK 
PackageFile: Linnorm_1.1.14.tgz
PackageFileSize: 5.313 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf Linnorm.buildbin-libdir && mkdir Linnorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Linnorm_1.1.14.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Linnorm.buildbin-libdir
###
##############################################################################
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Linnorm.buildbin-libdir Linnorm_1.1.14.tar.gz'
>>>>>>> 

* installing *source* package ‘Linnorm’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/RcppArmadillo/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c Misc.cpp -o Misc.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Linnorm.so Misc.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.4-bioc/meat/Linnorm.buildbin-libdir/Linnorm/libs
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import ‘stats::decompose’ by ‘igraph::decompose’ when loading ‘Linnorm’
Warning: replacing previous import ‘stats::spectrum’ by ‘igraph::spectrum’ when loading ‘Linnorm’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import ‘stats::decompose’ by ‘igraph::decompose’ when loading ‘Linnorm’
Warning: replacing previous import ‘stats::spectrum’ by ‘igraph::spectrum’ when loading ‘Linnorm’
* DONE (Linnorm)


>>>>>>> 
>>>>>>> FIXING LINKS FOR Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so"