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BioC 3.4: INSTALL report for InteractionSet on moscato1

This page was generated on 2016-09-21 03:48:22 -0700 (Wed, 21 Sep 2016).

Package 619/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
InteractionSet 1.1.6
Aaron Lun
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/InteractionSet
Last Changed Rev: 120743 / Revision: 121152
Last Changed Date: 2016-09-06 01:26:14 -0700 (Tue, 06 Sep 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: InteractionSet
Version: 1.1.6
Command: rm -rf InteractionSet.buildbin-libdir && mkdir InteractionSet.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/InteractionSet_1.1.6.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=InteractionSet.buildbin-libdir --merge-multiarch InteractionSet_1.1.6.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL InteractionSet_1.1.6.zip && rm InteractionSet_1.1.6.tar.gz InteractionSet_1.1.6.zip
StartedAt: 2016-09-19 20:51:59 -0700 (Mon, 19 Sep 2016)
EndedAt: 2016-09-19 20:52:31 -0700 (Mon, 19 Sep 2016)
EllapsedTime: 32.4 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf InteractionSet.buildbin-libdir && mkdir InteractionSet.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/InteractionSet_1.1.6.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=InteractionSet.buildbin-libdir --merge-multiarch InteractionSet_1.1.6.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL InteractionSet_1.1.6.zip  && rm InteractionSet_1.1.6.tar.gz InteractionSet_1.1.6.zip
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 76185  100 76185    0     0  14.4M      0 --:--:-- --:--:-- --:--:-- 72.6M

install for i386

* installing *source* package 'InteractionSet' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c box_bounds.cpp -o box_bounds.o
C:/Rtools/mingw_32/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c init.cpp -o init.o
C:/Rtools/mingw_32/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c overlaps.cpp -o overlaps.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o InteractionSet.dll tmp.def box_bounds.o init.o overlaps.o -Lc:/local323/lib/i386 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/InteractionSet.buildbin-libdir/InteractionSet/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'InteractionSet' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c box_bounds.cpp -o box_bounds.o
C:/Rtools/mingw_64/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c init.cpp -o init.o
C:/Rtools/mingw_64/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c overlaps.cpp -o overlaps.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o InteractionSet.dll tmp.def box_bounds.o init.o overlaps.o -Lc:/local323/lib/x64 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/InteractionSet.buildbin-libdir/InteractionSet/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'InteractionSet' as InteractionSet_1.1.6.zip
* DONE (InteractionSet)
* installing to library 'D:/biocbld/bbs-3.4-bioc/R/library'
package 'InteractionSet' successfully unpacked and MD5 sums checked