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BioC 3.4: INSTALL report for GeneSelectMMD on morelia

This page was generated on 2016-09-21 03:50:18 -0700 (Wed, 21 Sep 2016).

Package 480/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneSelectMMD 2.17.0
Weiliang Qiu
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneSelectMMD
Last Changed Rev: 117081 / Revision: 121152
Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GeneSelectMMD
Version: 2.17.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL GeneSelectMMD
StartedAt: 2016-09-19 20:14:28 -0700 (Mon, 19 Sep 2016)
EndedAt: 2016-09-19 20:14:33 -0700 (Mon, 19 Sep 2016)
EllapsedTime: 5.0 seconds
RetCode: 0
Status:  OK 

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL GeneSelectMMD
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library’
* installing *source* package ‘GeneSelectMMD’ ...
** libs
gfortran-4.8   -fPIC  -g -O2 -Wall  -c Qfunc.f -o Qfunc.o
gfortran-4.8   -fPIC  -g -O2 -Wall  -c blas.f -o blas.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c isnan.c -o isnan.o
gfortran-4.8   -fPIC  -g -O2 -Wall  -c lbfgsb.f -o lbfgsb.o
lbfgsb.f: In function ‘cauchy’:
lbfgsb.f:1453:0: warning: ‘tu’ may be used uninitialized in this function [-Wmaybe-uninitialized]
             xupper = nbd(i) .ge. 2 .and. tu .le. zero
 ^
lbfgsb.f:1482:0: warning: ‘tl’ may be used uninitialized in this function [-Wmaybe-uninitialized]
                t(nbreak) = tl/(-neggi)
 ^
gfortran-4.8   -fPIC  -g -O2 -Wall  -c lbfgsbDriver.f -o lbfgsbDriver.o
gfortran-4.8   -fPIC  -g -O2 -Wall  -c linpack.f -o linpack.o
gfortran-4.8   -fPIC  -g -O2 -Wall  -c llkhFun.f -o llkhFun.o
gfortran-4.8   -fPIC  -g -O2 -Wall  -c myTtest.f -o myTtest.o
gfortran-4.8   -fPIC  -g -O2 -Wall  -c paraEstLoop.f -o paraEstLoop.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c pt.c -o pt.o
gfortran-4.8   -fPIC  -g -O2 -Wall  -c timer.f -o timer.o
gfortran-4.8   -fPIC  -g -O2 -Wall  -c wiFun.f -o wiFun.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GeneSelectMMD.so Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o llkhFun.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.3/Resources/library/GeneSelectMMD/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GeneSelectMMD)