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BioC 3.4: BUILD report for GGtools on morelia

This page was generated on 2016-09-21 03:49:37 -0700 (Wed, 21 Sep 2016).

Package 514/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GGtools 5.9.0
VJ Carey
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GGtools
Last Changed Rev: 117081 / Revision: 121152
Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: GGtools
Version: 5.9.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GGtools
StartedAt: 2016-09-19 20:55:53 -0700 (Mon, 19 Sep 2016)
EndedAt: 2016-09-19 21:00:15 -0700 (Mon, 19 Sep 2016)
EllapsedTime: 261.7 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GGtools
###
##############################################################################
##############################################################################


* checking for file ‘GGtools/DESCRIPTION’ ... OK
* preparing ‘GGtools’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Warning: replacing previous import ‘IRanges::which’ by ‘Matrix::which’ when loading ‘GGBase’
Loading required package: illuminaHumanv1.db

NOTE: some SNP in rsid were not found in location db SNPlocs.Hsapiens.dbSNP144.GRCh37
NOTE: expanding gene ranges by radius 75000 leads to negative start positions that are reset to 1.
Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,  : 
  Running 'texi2dvi' on 'GGtools.tex' failed.
LaTeX errors:
! Package auto-pst-pdf Error: 
    "shell escape" (or "write18") is not enabled:
    auto-pst-pdf will not work!
.

! Emergency stop.
 ...                                              
                                                  
l.134         Or turn off auto-pst-pdf.}
                                        %
!  ==> Fatal error occurred, no output PDF file produced!
Calls: <Anonymous> -> texi2pdf -> texi2dvi
Execution halted