| Back to the "Multiple platform build/check report" | A [B] C D E F G H I J K L M N O P Q R S T U V W X Y Z |
This page was generated on 2016-09-21 03:45:45 -0700 (Wed, 21 Sep 2016).
| Package 108/1257 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| BiocCheck 1.9.6 Bioconductor Package Maintainer
| zin1 | Linux (Ubuntu 16.04 LTS) / x86_64 | OK | OK | OK |  | |||||
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | OK | OK | [ ERROR ] | OK | ||||||
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
| Package: BiocCheck |
| Version: 1.9.6 |
| Command: rm -rf BiocCheck.buildbin-libdir BiocCheck.Rcheck && mkdir BiocCheck.buildbin-libdir BiocCheck.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BiocCheck.buildbin-libdir BiocCheck_1.9.6.tar.gz >BiocCheck.Rcheck\00install.out 2>&1 && cp BiocCheck.Rcheck\00install.out BiocCheck-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=BiocCheck.buildbin-libdir --install="check:BiocCheck-install.out" --force-multiarch --no-vignettes --timings BiocCheck_1.9.6.tar.gz |
| StartedAt: 2016-09-20 04:39:47 -0700 (Tue, 20 Sep 2016) |
| EndedAt: 2016-09-20 04:42:22 -0700 (Tue, 20 Sep 2016) |
| EllapsedTime: 155.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: BiocCheck.Rcheck |
| Warnings: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf BiocCheck.buildbin-libdir BiocCheck.Rcheck && mkdir BiocCheck.buildbin-libdir BiocCheck.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BiocCheck.buildbin-libdir BiocCheck_1.9.6.tar.gz >BiocCheck.Rcheck\00install.out 2>&1 && cp BiocCheck.Rcheck\00install.out BiocCheck-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=BiocCheck.buildbin-libdir --install="check:BiocCheck-install.out" --force-multiarch --no-vignettes --timings BiocCheck_1.9.6.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/BiocCheck.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BiocCheck/DESCRIPTION' ... OK
* this is package 'BiocCheck' version '1.9.6'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: 'codetoolsBioC'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BiocCheck' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
'knitr:::detect_pattern' 'tools:::RdTags'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
BiocCheck 5.57 1.31 8.18
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
BiocCheck 4.79 1.59 7.85
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R'
Warning message:
running command '"D:/biocbld/BBS-3˜1.4-B/R/bin/i386/R" CMD BATCH --vanilla "runTests.R" "runTests.Rout"' had status 1
ERROR
Running the tests in 'tests/runTests.R' failed.
Last 13 lines of output:
BiocCheck RUnit Tests - 29 test functions, 1 error, 0 failures
ERROR in test_installAndLoad: Error in BiocCheck:::installAndLoad(create_test_package("testpkg")) :
'dir.create' failed
Test files with failing tests
test_BiocCheck.R
test_installAndLoad
Error in BiocGenerics:::testPackage("BiocCheck") :
unit tests failed for package BiocCheck
Execution halted
** running tests for arch 'x64' ...
Running 'runTests.R'
Warning message:
running command '"D:/biocbld/BBS-3˜1.4-B/R/bin/x64/R" CMD BATCH --vanilla "runTests.R" "runTests.Rout"' had status 1
ERROR
Running the tests in 'tests/runTests.R' failed.
Last 13 lines of output:
BiocCheck RUnit Tests - 29 test functions, 1 error, 0 failures
ERROR in test_installAndLoad: Error in BiocCheck:::installAndLoad(create_test_package("testpkg")) :
'dir.create' failed
Test files with failing tests
test_BiocCheck.R
test_installAndLoad
Error in BiocGenerics:::testPackage("BiocCheck") :
unit tests failed for package BiocCheck
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 ERRORs, 2 NOTEs
See
'D:/biocbld/bbs-3.4-bioc/meat/BiocCheck.Rcheck/00check.log'
for details.
runTests.Rout.fail:
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("BiocCheck")
* Checking for blank lines in DESCRIPTION...
* Checking for whitespace in DESCRIPTION field names...
* REQUIRED: Remove whitespace from DESCRIPTION field names.
* Checking for blank lines in DESCRIPTION...
* REQUIRED: Remove blank lines from DESCRIPTION!
* Checking for blank lines in DESCRIPTION...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches dir/tarball name...
* REQUIRED: Package dir unitTestTempDir must match Package: field (
got Foo)!
* Checking for blank lines in DESCRIPTION...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches dir/tarball name...
* REQUIRED: Package dir unitTestTempDir must match Package: field (
got )!
* Checking for blank lines in DESCRIPTION...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches dir/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* REQUIRED: Authors@R must evaluate to 'person' object!
* Checking for blank lines in DESCRIPTION...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches dir/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* REQUIRED: One author with maintainer (cre) role.
* Checking for blank lines in DESCRIPTION...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches dir/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* REQUIRED: Maintainer or Authors@R field in DESCRIPTION file!
* Checking for blank lines in DESCRIPTION...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches dir/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* REQUIRED: Email address in Maintainer field.
* Checking for blank lines in DESCRIPTION...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches dir/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* Checking for blank lines in DESCRIPTION...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches dir/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* Checking that biocViews are present...
* REQUIRED: Add some biocViews!
* Checking that biocViews are present...
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* RECOMMENDED: Use valid biocViews. Invalid ones: foo, Cancer, bar,
baz
* Checking for recommended biocViews...
* Checking that biocViews are present...
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking that biocViews are present...
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* RECOMMENDED: Use biocViews from one category only (one of
Software, ExperimentData, AnnotationData)
* REQUIRED: Use 'parallel' instead of 'multicore'. 'multicore' is
deprecated and does not work on Windows.
Creating package 'testpkg' in 'D:/biocbld/bbs-3.4-bioc/tmpdir/RtmpOsb8Ns'
No DESCRIPTION found. Creating with values:
Package: testpkg
Title: What the Package Does (one line, title case)
Version: 0.0.0.9000
Description: What the package does (one paragraph).
Depends: R (>= 3.3.1)
License: What license is it under?
Encoding: UTF-8
LazyData: true
Author: Test Author
Maintainer: Test Maintainer <test@test.com>
Imports: devtools
PACKAGE CREATED
* RECOMMENDED: Import devtools in NAMESPACE as well as DESCRIPTION.
Creating package 'testpkg' in 'D:/biocbld/bbs-3.4-bioc/tmpdir/RtmpOsb8Ns'
No DESCRIPTION found. Creating with values:
Package: testpkg
Title: What the Package Does (one line, title case)
Version: 0.0.0.9000
Description: What the package does (one paragraph).
Depends: R (>= 3.3.1)
License: What license is it under?
Encoding: UTF-8
LazyData: true
Author: Test Author
Maintainer: Test Maintainer <test@test.com>
PACKAGE CREATED
* RECOMMENDED: Import devtools in DESCRIPTION as well as NAMESPACE.
* REQUIRED: At least 80% of man pages documenting exported objects
must have runnable examples.The following pages do not:
baddep.Rd
* Checking if other packages can import this one...
* REQUIRED: Packages (RJSONIO) which provide isValidJSON (used in
baddep) should be imported in the NAMESPACE file, otherwise
packages that import testpkg0 could fail.
* Checking to see if we understand object initialization....
* CONSIDER: Clarifying how objects 'R, colone' (used in has_devel,
iambad) were initialized. Maybe they are part of a data set
loaded with data(), or perhaps part of an object referenced in
with() or within().
Loading required namespace: knitr
Found browser() in R/morecode.R (line 1, column 12)
Creating package 'testpkg' in 'D:/biocbld/bbs-3.4-bioc/tmpdir/RtmpOsb8Ns'
No DESCRIPTION found. Creating with values:
Package: testpkg
Title: What the Package Does (one line, title case)
Version: 0.0.0.9000
Description: What the package does (one paragraph).
Depends: R (>= 3.3.1)
License: What license is it under?
Encoding: UTF-8
LazyData: true
Author: Test Author
Maintainer: Test Maintainer <test@test.com>
VignetteBuilder: knitr
PACKAGE CREATED
Found @ in
* CONSIDER: Using accessors; don't access S4 class slots via '@' in
examples/vignettes.
* CONSIDER: Removing generated comments from man pages a.Rd,
baddep.Rd
Creating package 'badpkg' in 'D:/biocbld/bbs-3.4-bioc/tmpdir/RtmpOsb8Ns'
No DESCRIPTION found. Creating with values:
Package: badpkg
Title: What the Package Does (one line, title case)
Version: 0.0.1
Description: What the package does (one paragraph).
Depends: R (>= 3.3.1)
License: What license is it under?
Encoding: UTF-8
LazyData: true
Author: Test Author
Maintainer: Test Maintainer <test@test.com>
PACKAGE CREATED
* REQUIRED: Version number in tarball filename must match Version
field in DESCRIPTION. (Tip: create tarball with R CMD build)
* CONSIDER: Shortening lines; 1 lines (0%) are > 80 characters
long.
* CONSIDER: Replacing tabs with 4 spaces; 2 lines (0%) contain
tabs.
* CONSIDER: Indenting lines with a multiple of 4 spaces; 1 lines
(0%) are not.
See http://bioconductor.org/developers/how-to/coding-style/
* CONSIDER: Adding a NEWS file, so your package news will be
included in Bioconductor release announcements.
* RECOMMENDED: Fix formatting of NEWS.Rd! Malformed package NEWS
will not be included in Bioconductor release announcements.
* REQUIRED: New package version starting with 0.99.* (e.g., 0.99.0,
0.99.1, ...); got '1.2.3'.
* RECOMMENDED: Update R version dependency from 1.0.0 to 3.3.
* RECOMMENDED: Register native routines! see
http://cran.r-project.org/doc/manuals/R-exts.html#Registering-native-routines
Found T in R/morecode.R (line 10, column 8)
Found F in R/morecode.R (line 7, column 5)
* CONSIDER: Adding unit tests. We strongly encourage them. See
http://bioconductor.org/developers/how-to/unitTesting-guidelines/.
* REQUIRED: Valid package Version, see
http://www.bioconductor.org/developers/how-to/version-numbering/
* REQUIRED: Valid package Version, see
http://www.bioconductor.org/developers/how-to/version-numbering/
* RECOMMENDED: y of x.y.z version should be odd in devel
Timing stopped at: 0 0 0
Error in BiocCheck:::installAndLoad(create_test_package("testpkg")) :
'dir.create' failed
* REQUIRED: 'vignettes' directory!
* REQUIRED: vignette sources in vignettes/ directory.
# of chunks: 0, # of eval=FALSE: 0 (0%)
* RECOMMENDED: Remove vignette sources from inst/doc; they belong
in vignettes/.
# of chunks: 0, # of eval=FALSE: 0 (0%)
* RECOMMENDED: Remove vignette sources from inst/doc; they belong
in vignettes/.
# of chunks: 0, # of eval=FALSE: 0 (0%)
# of chunks: 0, # of eval=FALSE: 0 (0%)
# of chunks: 2, # of eval=FALSE: 1 (50%)
* RECOMMENDED: Evaluate more vignette chunks.
RUNIT TEST PROTOCOL -- Tue Sep 20 04:41:49 2016
***********************************************
Number of test functions: 29
Number of errors: 1
Number of failures: 0
1 Test Suite :
BiocCheck RUnit Tests - 29 test functions, 1 error, 0 failures
ERROR in test_installAndLoad: Error in BiocCheck:::installAndLoad(create_test_package("testpkg")) :
'dir.create' failed
Test files with failing tests
test_BiocCheck.R
test_installAndLoad
Error in BiocGenerics:::testPackage("BiocCheck") :
unit tests failed for package BiocCheck
Execution halted
runTests.Rout.fail:
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("BiocCheck")
* Checking for blank lines in DESCRIPTION...
* Checking for whitespace in DESCRIPTION field names...
* REQUIRED: Remove whitespace from DESCRIPTION field names.
* Checking for blank lines in DESCRIPTION...
* REQUIRED: Remove blank lines from DESCRIPTION!
* Checking for blank lines in DESCRIPTION...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches dir/tarball name...
* REQUIRED: Package dir unitTestTempDir must match Package: field (
got Foo)!
* Checking for blank lines in DESCRIPTION...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches dir/tarball name...
* REQUIRED: Package dir unitTestTempDir must match Package: field (
got )!
* Checking for blank lines in DESCRIPTION...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches dir/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* REQUIRED: Authors@R must evaluate to 'person' object!
* Checking for blank lines in DESCRIPTION...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches dir/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* REQUIRED: One author with maintainer (cre) role.
* Checking for blank lines in DESCRIPTION...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches dir/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* REQUIRED: Maintainer or Authors@R field in DESCRIPTION file!
* Checking for blank lines in DESCRIPTION...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches dir/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* REQUIRED: Email address in Maintainer field.
* Checking for blank lines in DESCRIPTION...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches dir/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* Checking for blank lines in DESCRIPTION...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches dir/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* Checking that biocViews are present...
* REQUIRED: Add some biocViews!
* Checking that biocViews are present...
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* RECOMMENDED: Use valid biocViews. Invalid ones: foo, Cancer, bar,
baz
* Checking for recommended biocViews...
* Checking that biocViews are present...
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking that biocViews are present...
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* RECOMMENDED: Use biocViews from one category only (one of
Software, ExperimentData, AnnotationData)
* REQUIRED: Use 'parallel' instead of 'multicore'. 'multicore' is
deprecated and does not work on Windows.
Creating package 'testpkg' in 'D:/biocbld/bbs-3.4-bioc/tmpdir/RtmpGENqyG'
No DESCRIPTION found. Creating with values:
Package: testpkg
Title: What the Package Does (one line, title case)
Version: 0.0.0.9000
Description: What the package does (one paragraph).
Depends: R (>= 3.3.1)
License: What license is it under?
Encoding: UTF-8
LazyData: true
Author: Test Author
Maintainer: Test Maintainer <test@test.com>
Imports: devtools
PACKAGE CREATED
* RECOMMENDED: Import devtools in NAMESPACE as well as DESCRIPTION.
Creating package 'testpkg' in 'D:/biocbld/bbs-3.4-bioc/tmpdir/RtmpGENqyG'
No DESCRIPTION found. Creating with values:
Package: testpkg
Title: What the Package Does (one line, title case)
Version: 0.0.0.9000
Description: What the package does (one paragraph).
Depends: R (>= 3.3.1)
License: What license is it under?
Encoding: UTF-8
LazyData: true
Author: Test Author
Maintainer: Test Maintainer <test@test.com>
PACKAGE CREATED
* RECOMMENDED: Import devtools in DESCRIPTION as well as NAMESPACE.
* REQUIRED: At least 80% of man pages documenting exported objects
must have runnable examples.The following pages do not:
baddep.Rd
* Checking if other packages can import this one...
* REQUIRED: Packages (RJSONIO) which provide isValidJSON (used in
baddep) should be imported in the NAMESPACE file, otherwise
packages that import testpkg0 could fail.
* Checking to see if we understand object initialization....
* CONSIDER: Clarifying how objects 'R, colone' (used in has_devel,
iambad) were initialized. Maybe they are part of a data set
loaded with data(), or perhaps part of an object referenced in
with() or within().
Loading required namespace: knitr
Found browser() in R/morecode.R (line 1, column 12)
Creating package 'testpkg' in 'D:/biocbld/bbs-3.4-bioc/tmpdir/RtmpGENqyG'
No DESCRIPTION found. Creating with values:
Package: testpkg
Title: What the Package Does (one line, title case)
Version: 0.0.0.9000
Description: What the package does (one paragraph).
Depends: R (>= 3.3.1)
License: What license is it under?
Encoding: UTF-8
LazyData: true
Author: Test Author
Maintainer: Test Maintainer <test@test.com>
VignetteBuilder: knitr
PACKAGE CREATED
Found @ in
* CONSIDER: Using accessors; don't access S4 class slots via '@' in
examples/vignettes.
* CONSIDER: Removing generated comments from man pages a.Rd,
baddep.Rd
Creating package 'badpkg' in 'D:/biocbld/bbs-3.4-bioc/tmpdir/RtmpGENqyG'
No DESCRIPTION found. Creating with values:
Package: badpkg
Title: What the Package Does (one line, title case)
Version: 0.0.1
Description: What the package does (one paragraph).
Depends: R (>= 3.3.1)
License: What license is it under?
Encoding: UTF-8
LazyData: true
Author: Test Author
Maintainer: Test Maintainer <test@test.com>
PACKAGE CREATED
* REQUIRED: Version number in tarball filename must match Version
field in DESCRIPTION. (Tip: create tarball with R CMD build)
* CONSIDER: Shortening lines; 1 lines (0%) are > 80 characters
long.
* CONSIDER: Replacing tabs with 4 spaces; 2 lines (0%) contain
tabs.
* CONSIDER: Indenting lines with a multiple of 4 spaces; 1 lines
(0%) are not.
See http://bioconductor.org/developers/how-to/coding-style/
* CONSIDER: Adding a NEWS file, so your package news will be
included in Bioconductor release announcements.
* RECOMMENDED: Fix formatting of NEWS.Rd! Malformed package NEWS
will not be included in Bioconductor release announcements.
* REQUIRED: New package version starting with 0.99.* (e.g., 0.99.0,
0.99.1, ...); got '1.2.3'.
* RECOMMENDED: Update R version dependency from 1.0.0 to 3.3.
* RECOMMENDED: Register native routines! see
http://cran.r-project.org/doc/manuals/R-exts.html#Registering-native-routines
Found T in R/morecode.R (line 10, column 8)
Found F in R/morecode.R (line 7, column 5)
* CONSIDER: Adding unit tests. We strongly encourage them. See
http://bioconductor.org/developers/how-to/unitTesting-guidelines/.
* REQUIRED: Valid package Version, see
http://www.bioconductor.org/developers/how-to/version-numbering/
* REQUIRED: Valid package Version, see
http://www.bioconductor.org/developers/how-to/version-numbering/
* RECOMMENDED: y of x.y.z version should be odd in devel
Timing stopped at: 0.02 0 0.01
Error in BiocCheck:::installAndLoad(create_test_package("testpkg")) :
'dir.create' failed
* REQUIRED: 'vignettes' directory!
* REQUIRED: vignette sources in vignettes/ directory.
# of chunks: 0, # of eval=FALSE: 0 (0%)
* RECOMMENDED: Remove vignette sources from inst/doc; they belong
in vignettes/.
# of chunks: 0, # of eval=FALSE: 0 (0%)
* RECOMMENDED: Remove vignette sources from inst/doc; they belong
in vignettes/.
# of chunks: 0, # of eval=FALSE: 0 (0%)
# of chunks: 0, # of eval=FALSE: 0 (0%)
# of chunks: 2, # of eval=FALSE: 1 (50%)
* RECOMMENDED: Evaluate more vignette chunks.
RUNIT TEST PROTOCOL -- Tue Sep 20 04:42:18 2016
***********************************************
Number of test functions: 29
Number of errors: 1
Number of failures: 0
1 Test Suite :
BiocCheck RUnit Tests - 29 test functions, 1 error, 0 failures
ERROR in test_installAndLoad: Error in BiocCheck:::installAndLoad(create_test_package("testpkg")) :
'dir.create' failed
Test files with failing tests
test_BiocCheck.R
test_installAndLoad
Error in BiocGenerics:::testPackage("BiocCheck") :
unit tests failed for package BiocCheck
Execution halted
BiocCheck.Rcheck/00install.out:
install for i386 * installing *source* package 'BiocCheck' ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded install for x64 * installing *source* package 'BiocCheck' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'BiocCheck' as BiocCheck_1.9.6.zip * DONE (BiocCheck)
BiocCheck.Rcheck/examples_i386/BiocCheck-Ex.timings:
| name | user | system | elapsed | |
| BiocCheck | 5.57 | 1.31 | 8.18 | |
BiocCheck.Rcheck/examples_x64/BiocCheck-Ex.timings:
| name | user | system | elapsed | |
| BiocCheck | 4.79 | 1.59 | 7.85 | |