Back to the "Multiple platform build/check report" A [B] C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.4: CHECK report for BatchQC on moscato1

This page was generated on 2016-09-21 03:48:19 -0700 (Wed, 21 Sep 2016).

Package 83/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BatchQC 1.1.22
Solaiappan Manimaran
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BatchQC
Last Changed Rev: 120631 / Revision: 121152
Last Changed Date: 2016-08-31 17:12:41 -0700 (Wed, 31 Aug 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BatchQC
Version: 1.1.22
Command: rm -rf BatchQC.buildbin-libdir BatchQC.Rcheck && mkdir BatchQC.buildbin-libdir BatchQC.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BatchQC.buildbin-libdir BatchQC_1.1.22.tar.gz >BatchQC.Rcheck\00install.out 2>&1 && cp BatchQC.Rcheck\00install.out BatchQC-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=BatchQC.buildbin-libdir --install="check:BatchQC-install.out" --force-multiarch --no-vignettes --timings BatchQC_1.1.22.tar.gz
StartedAt: 2016-09-20 04:20:19 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 04:24:15 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 236.0 seconds
RetCode: 0
Status:  OK  
CheckDir: BatchQC.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf BatchQC.buildbin-libdir BatchQC.Rcheck && mkdir BatchQC.buildbin-libdir BatchQC.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BatchQC.buildbin-libdir BatchQC_1.1.22.tar.gz >BatchQC.Rcheck\00install.out 2>&1 && cp BatchQC.Rcheck\00install.out BatchQC-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=BatchQC.buildbin-libdir --install="check:BatchQC-install.out" --force-multiarch --no-vignettes --timings BatchQC_1.1.22.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/BatchQC.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BatchQC/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BatchQC' version '1.1.22'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BatchQC' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
        user system elapsed
batchQC 2.27   0.38    5.23
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

BatchQC.Rcheck/00install.out:


install for i386

* installing *source* package 'BatchQC' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'BatchQC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BatchQC' as BatchQC_1.1.22.zip
* DONE (BatchQC)

BatchQC.Rcheck/examples_i386/BatchQC-Ex.timings:

nameusersystemelapsed
batchQC2.270.385.23
batchQC_analyze0.320.000.31
batchQC_condition_adjusted0.070.000.08
batchQC_filter_genes0.100.000.09
batchQC_fsva_adjusted0.230.000.24
batchQC_num.sv0.130.000.12
batchQC_shapeVariation0.090.000.09
batchQC_sva0.170.000.18
batchQC_svregress_adjusted0.210.000.20
batchqc_circosplot0.120.000.12
batchqc_correlation0.230.000.24
batchqc_corscatter0.070.000.06
batchqc_explained_variation0.030.000.03
batchqc_heatmap0.20.00.2
batchqc_pc_explained_variation0.050.000.05
batchqc_pca0.050.000.04
batchqc_pca_svd0.190.000.19
batchtest0.060.000.06
combatPlot0.060.000.07
getShinyInput0.080.010.09
getShinyInputCombat000
getShinyInputOrig0.040.020.07
getShinyInputSVA000
getShinyInputSVAf000
getShinyInputSVAr000
gnormalize000
log2CPM0.060.000.07
rnaseq_sim0.250.010.26
setShinyInput000
setShinyInputCombat000
setShinyInputOrig000
setShinyInputSVA000
setShinyInputSVAf000
setShinyInputSVAr0.020.000.02

BatchQC.Rcheck/examples_x64/BatchQC-Ex.timings:

nameusersystemelapsed
batchQC2.690.363.65
batchQC_analyze0.360.000.56
batchQC_condition_adjusted0.070.000.08
batchQC_filter_genes0.070.000.06
batchQC_fsva_adjusted0.20.00.2
batchQC_num.sv0.120.000.13
batchQC_shapeVariation0.100.000.09
batchQC_sva0.180.000.19
batchQC_svregress_adjusted0.210.000.20
batchqc_circosplot0.140.000.14
batchqc_correlation0.250.000.25
batchqc_corscatter0.070.000.07
batchqc_explained_variation0.040.000.04
batchqc_heatmap0.240.000.24
batchqc_pc_explained_variation0.040.000.04
batchqc_pca0.070.000.07
batchqc_pca_svd0.230.000.23
batchtest0.080.000.08
combatPlot0.060.000.06
getShinyInput0.030.040.08
getShinyInputCombat0.020.000.02
getShinyInputOrig0.040.020.06
getShinyInputSVA000
getShinyInputSVAf000
getShinyInputSVAr000
gnormalize000
log2CPM0.080.000.08
rnaseq_sim0.250.010.26
setShinyInput000
setShinyInputCombat000
setShinyInputOrig000
setShinyInputSVA000
setShinyInputSVAf000
setShinyInputSVAr000