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BioC 3.4: CHECK report for ALDEx2 on moscato1

This page was generated on 2016-09-21 03:46:19 -0700 (Wed, 21 Sep 2016).

Package 34/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ALDEx2 1.5.1
Greg Gloor
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ALDEx2
Last Changed Rev: 119696 / Revision: 121152
Last Changed Date: 2016-07-27 12:16:41 -0700 (Wed, 27 Jul 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ALDEx2
Version: 1.5.1
Command: rm -rf ALDEx2.buildbin-libdir ALDEx2.Rcheck && mkdir ALDEx2.buildbin-libdir ALDEx2.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ALDEx2.buildbin-libdir ALDEx2_1.5.1.tar.gz >ALDEx2.Rcheck\00install.out 2>&1 && cp ALDEx2.Rcheck\00install.out ALDEx2-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=ALDEx2.buildbin-libdir --install="check:ALDEx2-install.out" --force-multiarch --no-vignettes --timings ALDEx2_1.5.1.tar.gz
StartedAt: 2016-09-20 03:44:31 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 03:47:29 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 177.5 seconds
RetCode: 0
Status:  OK  
CheckDir: ALDEx2.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ALDEx2.buildbin-libdir ALDEx2.Rcheck && mkdir ALDEx2.buildbin-libdir ALDEx2.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ALDEx2.buildbin-libdir ALDEx2_1.5.1.tar.gz >ALDEx2.Rcheck\00install.out 2>&1 && cp ALDEx2.Rcheck\00install.out ALDEx2-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=ALDEx2.buildbin-libdir --install="check:ALDEx2-install.out" --force-multiarch --no-vignettes --timings ALDEx2_1.5.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/ALDEx2.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ALDEx2/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ALDEx2' version '1.5.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ALDEx2' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

ALDEx2.Rcheck/00install.out:


install for i386

* installing *source* package 'ALDEx2' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'ALDEx2' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ALDEx2' as ALDEx2_1.5.1.zip
* DONE (ALDEx2)

ALDEx2.Rcheck/examples_i386/ALDEx2-Ex.timings:

nameusersystemelapsed
ALDEx2m-package000
aldex1.120.221.34
aldex.clr-class0.060.000.06
aldex.clr.function-methods0.060.000.06
aldex.corr000
aldex.effect1.560.001.56
aldex.glm2.280.002.28
aldex.set.mode0.060.000.06
aldex.ttest0.460.020.47
getFeatureNames-method0.040.000.05
getFeatures-method0.070.000.06
getMonteCarloInstances-method0.040.010.06
getMonteCarloReplicate-method0.070.000.07
getReads-method0.060.000.06
getSampleIDs-method0.060.000.06
numConditions-method0.050.000.05
numFeatures-method0.060.000.06
numMCInstances-method0.060.000.06
plot.aldex000

ALDEx2.Rcheck/examples_x64/ALDEx2-Ex.timings:

nameusersystemelapsed
ALDEx2m-package000
aldex1.450.201.66
aldex.clr-class0.060.000.06
aldex.clr.function-methods0.060.000.06
aldex.corr000
aldex.effect2.110.002.11
aldex.glm2.650.002.65
aldex.set.mode0.060.000.06
aldex.ttest0.580.000.58
getFeatureNames-method0.060.000.06
getFeatures-method0.050.000.05
getMonteCarloInstances-method0.040.000.05
getMonteCarloReplicate-method0.070.000.06
getReads-method0.060.000.06
getSampleIDs-method0.060.000.07
numConditions-method0.060.000.06
numFeatures-method0.060.000.06
numMCInstances-method0.050.000.05
plot.aldex0.020.000.01