| Back to Workflows build report for BioC 3.20 |
This page was generated on 2024-08-20 16:30 -0400 (Tue, 20 Aug 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 27/30 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| SingscoreAMLMutations 1.21.0 (landing page) Dharmesh D. Bhuva
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | |||||||||
|
To the developers/maintainers of the SingscoreAMLMutations package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SingscoreAMLMutations |
| Version: 1.21.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SingscoreAMLMutations |
| StartedAt: 2024-08-20 13:21:05 -0400 (Tue, 20 Aug 2024) |
| EndedAt: 2024-08-20 13:33:46 -0400 (Tue, 20 Aug 2024) |
| EllapsedTime: 761.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SingscoreAMLMutations ### ############################################################################## ############################################################################## * checking for file ‘SingscoreAMLMutations/DESCRIPTION’ ... OK * preparing ‘SingscoreAMLMutations’: * checking DESCRIPTION meta-information ...Warning in person1(given = given[[i]], family = family[[i]], middle = middle[[i]], : It is recommended to use ‘given’ instead of ‘middle’. Warning in person1(given = given[[i]], family = family[[i]], middle = middle[[i]], : It is recommended to use ‘given’ instead of ‘middle’. OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘workflow_transcriptional_mut_sig.Rmd’ using rmarkdown Quitting from lines 184-186 [gdc_download] (workflow_transcriptional_mut_sig.Rmd) Error: processing vignette 'workflow_transcriptional_mut_sig.Rmd' failed with diagnostics: There was an error in the download process (we might had a connection problem with GDC server). Please run this function it again. Try using method = `client` or setting files.per.chunk to a small number. --- failed re-building ‘workflow_transcriptional_mut_sig.Rmd’ --- re-building ‘workflow_transcriptional_mut_sig_chinese.Rmd’ using rmarkdown Quitting from lines 159-173 [gdc_results] (workflow_transcriptional_mut_sig_chinese.Rmd) Error: processing vignette 'workflow_transcriptional_mut_sig_chinese.Rmd' failed with diagnostics: cannot open the connection to 'https://api.gdc.cancer.gov/projects/TCGA-LAML?expand=summary,summary.data_categories&pretty=true' --- failed re-building ‘workflow_transcriptional_mut_sig_chinese.Rmd’ SUMMARY: processing the following files failed: ‘workflow_transcriptional_mut_sig.Rmd’ ‘workflow_transcriptional_mut_sig_chinese.Rmd’ Error: Vignette re-building failed. Execution halted