Back to Workflows build report for BioC 3.20 |
This page was generated on 2024-08-20 16:30 -0400 (Tue, 20 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 23/30 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
RnaSeqGeneEdgeRQL 1.29.0 (landing page) Yunshun Chen
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | |||||||||
To the developers/maintainers of the RnaSeqGeneEdgeRQL package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: RnaSeqGeneEdgeRQL |
Version: 1.29.0 |
Command: chmod a+r RnaSeqGeneEdgeRQL -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RnaSeqGeneEdgeRQL |
StartedAt: 2024-08-20 13:13:57 -0400 (Tue, 20 Aug 2024) |
EndedAt: 2024-08-20 13:14:24 -0400 (Tue, 20 Aug 2024) |
EllapsedTime: 26.9 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r RnaSeqGeneEdgeRQL -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RnaSeqGeneEdgeRQL ### ############################################################################## ############################################################################## * checking for file 'RnaSeqGeneEdgeRQL/DESCRIPTION' ... OK * preparing 'RnaSeqGeneEdgeRQL': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'edgeRQL.Rmd' using rmarkdown trying URL 'http://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE60450&format=file&file=GSE60450_Lactation-GenewiseCounts.txt.gz' Content type 'application/octet-stream' length 513592 bytes (501 KB) ================================================== downloaded 501 KB Quitting from lines 405-407 [decideTests] (edgeRQL.Rmd) Error: processing vignette 'edgeRQL.Rmd' failed with diagnostics: could not find function "decideTestsDGE" --- failed re-building 'edgeRQL.Rmd' SUMMARY: processing the following file failed: 'edgeRQL.Rmd' Error: Vignette re-building failed. Execution halted