Back to Workflows build report for BioC 3.20

This page was generated on 2024-08-20 16:30 -0400 (Tue, 20 Aug 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4703
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4440
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4472
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 23/30HostnameOS / ArchINSTALLBUILD
RnaSeqGeneEdgeRQL 1.29.0  (landing page)
Yunshun Chen
Snapshot Date: 2024-08-20 12:45 -0400 (Tue, 20 Aug 2024)
git_url: https://git.bioconductor.org/packages/RnaSeqGeneEdgeRQL
git_branch: devel
git_last_commit: 046cdf5
git_last_commit_date: 2024-04-30 10:13:33 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  

BUILD results for RnaSeqGeneEdgeRQL on palomino8

To the developers/maintainers of the RnaSeqGeneEdgeRQL package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: RnaSeqGeneEdgeRQL
Version: 1.29.0
Command: chmod a+r RnaSeqGeneEdgeRQL -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RnaSeqGeneEdgeRQL
StartedAt: 2024-08-20 13:13:57 -0400 (Tue, 20 Aug 2024)
EndedAt: 2024-08-20 13:14:24 -0400 (Tue, 20 Aug 2024)
EllapsedTime: 26.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r RnaSeqGeneEdgeRQL -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RnaSeqGeneEdgeRQL
###
##############################################################################
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* checking for file 'RnaSeqGeneEdgeRQL/DESCRIPTION' ... OK
* preparing 'RnaSeqGeneEdgeRQL':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'edgeRQL.Rmd' using rmarkdown
trying URL 'http://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE60450&format=file&file=GSE60450_Lactation-GenewiseCounts.txt.gz'
Content type 'application/octet-stream' length 513592 bytes (501 KB)
==================================================
downloaded 501 KB


Quitting from lines 405-407 [decideTests] (edgeRQL.Rmd)
Error: processing vignette 'edgeRQL.Rmd' failed with diagnostics:
could not find function "decideTestsDGE"
--- failed re-building 'edgeRQL.Rmd'

SUMMARY: processing the following file failed:
  'edgeRQL.Rmd'

Error: Vignette re-building failed.
Execution halted