Back to Workflows build report for BioC 3.20

This page was generated on 2024-08-20 16:30 -0400 (Tue, 20 Aug 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4703
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4440
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4472
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 20/30HostnameOS / ArchINSTALLBUILD
RNAseq123 1.29.0  (landing page)
Matthew Ritchie
Snapshot Date: 2024-08-20 12:45 -0400 (Tue, 20 Aug 2024)
git_url: https://git.bioconductor.org/packages/RNAseq123
git_branch: devel
git_last_commit: be6a371
git_last_commit_date: 2024-04-30 10:13:25 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  ERROR    ERROR  
palomino8Windows Server 2022 Datacenter / x64  ERROR    ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  ERROR    ERROR  

BUILD results for RNAseq123 on lconway

To the developers/maintainers of the RNAseq123 package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: RNAseq123
Version: 1.29.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RNAseq123
StartedAt: 2024-08-20 13:13:00 -0400 (Tue, 20 Aug 2024)
EndedAt: 2024-08-20 13:13:08 -0400 (Tue, 20 Aug 2024)
EllapsedTime: 8.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RNAseq123
###
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* checking for file ‘RNAseq123/DESCRIPTION’ ... OK
* preparing ‘RNAseq123’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘RNAseq123’ ...
** using staged installation
** inst
** help
No man pages found in package  ‘RNAseq123’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘Glimma’:
 object ‘decideTestsDGE’ is not exported by 'namespace:edgeR'
Error : package ‘Glimma’ could not be loaded
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/private/tmp/RtmpsYt82t/Rinst144f277612ac6/RNAseq123’
      -----------------------------------
ERROR: package installation failed