Back to Workflows build report for BioC 3.20 |
This page was generated on 2024-08-20 16:30 -0400 (Tue, 20 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 5/30 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
CAGEWorkflow 1.21.0 (landing page) Malte Thodberg
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | ![]() | |||||||
palomino8 | Windows Server 2022 Datacenter / x64 | ... NOT SUPPORTED ... | ||||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | |||||||||
To the developers/maintainers of the CAGEWorkflow package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: CAGEWorkflow |
Version: 1.21.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CAGEWorkflow |
StartedAt: 2024-08-20 13:11:33 -0400 (Tue, 20 Aug 2024) |
EndedAt: 2024-08-20 13:17:34 -0400 (Tue, 20 Aug 2024) |
EllapsedTime: 360.9 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CAGEWorkflow ### ############################################################################## ############################################################################## * checking for file ‘CAGEWorkflow/DESCRIPTION’ ... OK * preparing ‘CAGEWorkflow’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘CAGEWorkflow.Rmd’ using rmarkdown 2024-08-20 13:15:24.029 R[82392:78307470] XType: com.apple.fonts is not accessible. 2024-08-20 13:15:24.030 R[82392:78307470] XType: XTFontStaticRegistry is enabled. Quitting from lines 1005-1011 [kegga] (CAGEWorkflow.Rmd) Error: processing vignette 'CAGEWorkflow.Rmd' failed with diagnostics: cannot open the connection to 'https://rest.kegg.jp/link/pathway/mmu' --- failed re-building ‘CAGEWorkflow.Rmd’ SUMMARY: processing the following file failed: ‘CAGEWorkflow.Rmd’ Error: Vignette re-building failed. Execution halted