Back to Workflows build report for BioC 3.20

This page was generated on 2024-08-20 16:30 -0400 (Tue, 20 Aug 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4703
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4440
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4472
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 5/30HostnameOS / ArchINSTALLBUILD
CAGEWorkflow 1.21.0  (landing page)
Malte Thodberg
Snapshot Date: 2024-08-20 12:45 -0400 (Tue, 20 Aug 2024)
git_url: https://git.bioconductor.org/packages/CAGEWorkflow
git_branch: devel
git_last_commit: a1d7928
git_last_commit_date: 2024-04-30 10:14:05 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64... NOT SUPPORTED ...
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  

BUILD results for CAGEWorkflow on lconway

To the developers/maintainers of the CAGEWorkflow package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: CAGEWorkflow
Version: 1.21.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CAGEWorkflow
StartedAt: 2024-08-20 13:11:33 -0400 (Tue, 20 Aug 2024)
EndedAt: 2024-08-20 13:17:34 -0400 (Tue, 20 Aug 2024)
EllapsedTime: 360.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CAGEWorkflow
###
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* checking for file ‘CAGEWorkflow/DESCRIPTION’ ... OK
* preparing ‘CAGEWorkflow’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CAGEWorkflow.Rmd’ using rmarkdown
2024-08-20 13:15:24.029 R[82392:78307470] XType: com.apple.fonts is not accessible.
2024-08-20 13:15:24.030 R[82392:78307470] XType: XTFontStaticRegistry is enabled.

Quitting from lines 1005-1011 [kegga] (CAGEWorkflow.Rmd)
Error: processing vignette 'CAGEWorkflow.Rmd' failed with diagnostics:
cannot open the connection to 'https://rest.kegg.jp/link/pathway/mmu'
--- failed re-building ‘CAGEWorkflow.Rmd’

SUMMARY: processing the following file failed:
  ‘CAGEWorkflow.Rmd’

Error: Vignette re-building failed.
Execution halted