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This page was generated on 2024-10-31 19:08 -0400 (Thu, 31 Oct 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4763
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 311/431HostnameOS / ArchINSTALLBUILDCHECK
PWMEnrich.Hsapiens.background 4.40.0  (landing page)
Diego Diez
Snapshot Date: 2024-10-31 07:30 -0400 (Thu, 31 Oct 2024)
git_url: https://git.bioconductor.org/packages/PWMEnrich.Hsapiens.background
git_branch: RELEASE_3_20
git_last_commit: a72eda4
git_last_commit_date: 2024-10-29 09:37:37 -0400 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published


CHECK results for PWMEnrich.Hsapiens.background on nebbiolo2

To the developers/maintainers of the PWMEnrich.Hsapiens.background package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: PWMEnrich.Hsapiens.background
Version: 4.40.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:PWMEnrich.Hsapiens.background.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings PWMEnrich.Hsapiens.background_4.40.0.tar.gz
StartedAt: 2024-10-31 15:17:14 -0400 (Thu, 31 Oct 2024)
EndedAt: 2024-10-31 15:21:38 -0400 (Thu, 31 Oct 2024)
EllapsedTime: 264.9 seconds
RetCode: 0
Status:   OK  
CheckDir: PWMEnrich.Hsapiens.background.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:PWMEnrich.Hsapiens.background.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings PWMEnrich.Hsapiens.background_4.40.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/PWMEnrich.Hsapiens.background.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘PWMEnrich.Hsapiens.background/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PWMEnrich.Hsapiens.background’ version ‘4.40.0’
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PWMEnrich.Hsapiens.background’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 12.4Mb
  sub-directories of 1Mb or more:
    data  12.3Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.20-data-experiment/meat/PWMEnrich.Hsapiens.background.Rcheck/00check.log’
for details.


Installation output

PWMEnrich.Hsapiens.background.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL PWMEnrich.Hsapiens.background
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘PWMEnrich.Hsapiens.background’ ...
** using staged installation
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PWMEnrich.Hsapiens.background)

Tests output


Example timings

PWMEnrich.Hsapiens.background.Rcheck/PWMEnrich.Hsapiens.background-Ex.timings

nameusersystemelapsed
PWMEnrich.Hsapiens.background-package2.6210.0892.710