Back to Build/check report for BioC 3.20 experimental data
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2024-09-24 09:42 -0400 (Tue, 24 Sep 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4630
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 97/426HostnameOS / ArchINSTALLBUILDCHECK
DmelSGI 1.37.0  (landing page)
Mike Smith
Snapshot Date: 2024-09-24 04:35 -0400 (Tue, 24 Sep 2024)
git_url: https://git.bioconductor.org/packages/DmelSGI
git_branch: devel
git_last_commit: a3f0b3c
git_last_commit_date: 2024-04-30 10:43:26 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for DmelSGI on nebbiolo2

To the developers/maintainers of the DmelSGI package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: DmelSGI
Version: 1.37.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data DmelSGI
StartedAt: 2024-09-24 06:21:40 -0400 (Tue, 24 Sep 2024)
EndedAt: 2024-09-24 06:21:49 -0400 (Tue, 24 Sep 2024)
EllapsedTime: 9.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data DmelSGI
###
##############################################################################
##############################################################################


* checking for file ‘DmelSGI/DESCRIPTION’ ... OK
* preparing ‘DmelSGI’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DmelSGI.Rnw’ using knitr

\section{Re-analysis of a genetic interaction screen and experimental design}
\label{secReanalysisHorn}

The choice of the target--query experimental design was based on our
re-analysis of a symmetric genetic interaction matrix of 93 genes
described by~\cite{horn2011mapping}.














Quitting from lines 10-16 [ReanalysisOfHornEtALLoadLibrary] (./src/sec02_ReanalysisOfHornEtAl.Rnw)

Quitting from lines 91-91 [DmelSGIreanalysisOfHornEtAl] (DmelSGI.Rnw)
Error: processing vignette 'DmelSGI.Rnw' failed with diagnostics:
there is no package called 'RNAinteractMAPK'
--- failed re-building ‘DmelSGI.Rnw’

SUMMARY: processing the following file failed:
  ‘DmelSGI.Rnw’

Error: Vignette re-building failed.
Execution halted