| Back to Long Tests report for BioC 3.20 |
This page was generated on 2024-10-05 23:55 -0400 (Sat, 05 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4716 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4466 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4498 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 32/32 | Hostname | OS / Arch | CHECK | |||||||
| zellkonverter 1.15.3 (landing page) Luke Zappia
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | ERROR | |||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | ERROR | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ||||||||
|
To the developers/maintainers of the zellkonverter package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: zellkonverter |
| Version: 1.15.3 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no zellkonverter_1.15.3.tar.gz |
| StartedAt: 2024-10-05 16:26:17 -0400 (Sat, 05 Oct 2024) |
| EndedAt: 2024-10-05 16:34:57 -0400 (Sat, 05 Oct 2024) |
| EllapsedTime: 519.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: zellkonverter.Rcheck |
| Warnings: NA |
zellkonverter.Rcheck/tests/testthat.Rout.fail
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(zellkonverter)
Registered S3 method overwritten by 'zellkonverter':
method from
py_to_r.pandas.core.arrays.categorical.Categorical reticulate
>
> test_check("zellkonverter")
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6
added / updated specs:
- python=3.12.2
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_1
libexpat conda-forge/linux-64::libexpat-2.6.3-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.1.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.1.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.1.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.46.1-hadc24fc_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.3.2-hb9d3cd8_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/linux-64::python-3.12.2-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... failed
NoSpaceLeftError: No space left on devices.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6
added / updated specs:
- python=3.12.2
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_1
libexpat conda-forge/linux-64::libexpat-2.6.3-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.1.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.1.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.1.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.46.1-hadc24fc_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.3.2-hb9d3cd8_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/linux-64::python-3.12.2-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... failed
NoSpaceLeftError: No space left on devices.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6
added / updated specs:
- python=3.12.2
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_1
libexpat conda-forge/linux-64::libexpat-2.6.3-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.1.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.1.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.1.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.46.1-hadc24fc_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.3.2-hb9d3cd8_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/linux-64::python-3.12.2-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... failed
NoSpaceLeftError: No space left on devices.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6
added / updated specs:
- python=3.12.2
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_1
libexpat conda-forge/linux-64::libexpat-2.6.3-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.1.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.1.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.1.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.46.1-hadc24fc_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.3.2-hb9d3cd8_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/linux-64::python-3.12.2-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... failed
NoSpaceLeftError: No space left on devices.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6
added / updated specs:
- python=3.12.2
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_1
libexpat conda-forge/linux-64::libexpat-2.6.3-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.1.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.1.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.1.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.46.1-hadc24fc_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.3.2-hb9d3cd8_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/linux-64::python-3.12.2-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... failed
NoSpaceLeftError: No space left on devices.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6
added / updated specs:
- python=3.12.2
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_1
libexpat conda-forge/linux-64::libexpat-2.6.3-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.1.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.1.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.1.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.46.1-hadc24fc_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.3.2-hb9d3cd8_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/linux-64::python-3.12.2-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... failed
NoSpaceLeftError: No space left on devices.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6
added / updated specs:
- python=3.12.2
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_1
libexpat conda-forge/linux-64::libexpat-2.6.3-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.1.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.1.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.1.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.46.1-hadc24fc_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.3.2-hb9d3cd8_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/linux-64::python-3.12.2-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... failed
NoSpaceLeftError: No space left on devices.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6
added / updated specs:
- python=3.12.2
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_1
libexpat conda-forge/linux-64::libexpat-2.6.3-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.1.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.1.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.1.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.46.1-hadc24fc_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.3.2-hb9d3cd8_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/linux-64::python-3.12.2-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... failed
NoSpaceLeftError: No space left on devices.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6
added / updated specs:
- python=3.12.2
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_1
libexpat conda-forge/linux-64::libexpat-2.6.3-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.1.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.1.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.1.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.46.1-hadc24fc_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.3.2-hb9d3cd8_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/linux-64::python-3.12.2-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... failed
NoSpaceLeftError: No space left on devices.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6
added / updated specs:
- python=3.12.2
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_1
libexpat conda-forge/linux-64::libexpat-2.6.3-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.1.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.1.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.1.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.46.1-hadc24fc_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.3.2-hb9d3cd8_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/linux-64::python-3.12.2-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... failed
NoSpaceLeftError: No space left on devices.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6
added / updated specs:
- python=3.12.2
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_1
libexpat conda-forge/linux-64::libexpat-2.6.3-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.1.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.1.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.1.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.46.1-hadc24fc_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.3.2-hb9d3cd8_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/linux-64::python-3.12.2-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... failed
NoSpaceLeftError: No space left on devices.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6
added / updated specs:
- python=3.12.2
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_1
libexpat conda-forge/linux-64::libexpat-2.6.3-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.1.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.1.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.1.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.46.1-hadc24fc_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.3.2-hb9d3cd8_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/linux-64::python-3.12.2-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... failed
NoSpaceLeftError: No space left on devices.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6
added / updated specs:
- python=3.12.2
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_1
libexpat conda-forge/linux-64::libexpat-2.6.3-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.1.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.1.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.1.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.46.1-hadc24fc_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.3.2-hb9d3cd8_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/linux-64::python-3.12.2-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... failed
NoSpaceLeftError: No space left on devices.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6
added / updated specs:
- python=3.12.2
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_1
libexpat conda-forge/linux-64::libexpat-2.6.3-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.1.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.1.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.1.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.46.1-hadc24fc_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.3.2-hb9d3cd8_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/linux-64::python-3.12.2-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... failed
NoSpaceLeftError: No space left on devices.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6
added / updated specs:
- python=3.12.2
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_1
libexpat conda-forge/linux-64::libexpat-2.6.3-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.1.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.1.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.1.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.46.1-hadc24fc_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.3.2-hb9d3cd8_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/linux-64::python-3.12.2-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... failed
NoSpaceLeftError: No space left on devices.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6
added / updated specs:
- python=3.12.2
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_1
libexpat conda-forge/linux-64::libexpat-2.6.3-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.1.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.1.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.1.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.46.1-hadc24fc_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.3.2-hb9d3cd8_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/linux-64::python-3.12.2-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... failed
NoSpaceLeftError: No space left on devices.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6
added / updated specs:
- python=3.12.2
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_1
libexpat conda-forge/linux-64::libexpat-2.6.3-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.1.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.1.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.1.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.46.1-hadc24fc_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.3.2-hb9d3cd8_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/linux-64::python-3.12.2-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... failed
NoSpaceLeftError: No space left on devices.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6
added / updated specs:
- python=3.12.2
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_1
libexpat conda-forge/linux-64::libexpat-2.6.3-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.1.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.1.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.1.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.46.1-hadc24fc_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.3.2-hb9d3cd8_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/linux-64::python-3.12.2-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... failed
NoSpaceLeftError: No space left on devices.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6
added / updated specs:
- python=3.12.2
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_1
libexpat conda-forge/linux-64::libexpat-2.6.3-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.1.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.1.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.1.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.46.1-hadc24fc_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.3.2-hb9d3cd8_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/linux-64::python-3.12.2-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... failed
NoSpaceLeftError: No space left on devices.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6
added / updated specs:
- python=3.12.2
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_1
libexpat conda-forge/linux-64::libexpat-2.6.3-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.1.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.1.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.1.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.46.1-hadc24fc_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.3.2-hb9d3cd8_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/linux-64::python-3.12.2-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... failed
NoSpaceLeftError: No space left on devices.
[ FAIL 20 | WARN 14 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-cellrank_pancreas.R:45:10'): Reading H5AD works ────────────────
Error: Error creating conda environment '/var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6' [exit code 1]
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-cellrank_pancreas.R:44:5
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─zellkonverter::readH5AD(file) at test-cellrank_pancreas.R:45:10
7. └─basilisk::basiliskRun(...)
8. └─basilisk::basiliskStart(...)
9. └─basilisk::obtainEnvironmentPath(env)
10. └─basilisk::setupBasiliskEnv(...)
11. └─reticulate::conda_install(...)
12. └─reticulate::conda_create(...)
13. └─reticulate:::stopf(fmt, envname, result, call. = FALSE)
── Error ('test-cellrank_pancreas.R:51:1'): (code run outside of `test_that()`) ──
Error: Error creating conda environment '/var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6' [exit code 1]
Backtrace:
▆
1. ├─base::suppressWarnings(readH5AD(file)) at test-cellrank_pancreas.R:51:1
2. │ └─base::withCallingHandlers(...)
3. └─zellkonverter::readH5AD(file)
4. └─basilisk::basiliskRun(...)
5. └─basilisk::basiliskStart(...)
6. └─basilisk::obtainEnvironmentPath(env)
7. └─basilisk::setupBasiliskEnv(...)
8. └─reticulate::conda_install(...)
9. └─reticulate::conda_create(...)
10. └─reticulate:::stopf(fmt, envname, result, call. = FALSE)
── Error ('test-example_anndata.R:21:5'): Reading H5AD works ───────────────────
Error: Error creating conda environment '/var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6' [exit code 1]
Backtrace:
▆
1. └─zellkonverter::readH5AD(file) at test-example_anndata.R:21:5
2. └─basilisk::basiliskRun(...)
3. └─basilisk::basiliskStart(...)
4. └─basilisk::obtainEnvironmentPath(env)
5. └─basilisk::setupBasiliskEnv(...)
6. └─reticulate::conda_install(...)
7. └─reticulate::conda_create(...)
8. └─reticulate:::stopf(fmt, envname, result, call. = FALSE)
── Error ('test-example_anndata.R:25:1'): (code run outside of `test_that()`) ──
Error: Error creating conda environment '/var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6' [exit code 1]
Backtrace:
▆
1. ├─base::suppressWarnings(readH5AD(file)) at test-example_anndata.R:25:1
2. │ └─base::withCallingHandlers(...)
3. └─zellkonverter::readH5AD(file)
4. └─basilisk::basiliskRun(...)
5. └─basilisk::basiliskStart(...)
6. └─basilisk::obtainEnvironmentPath(env)
7. └─basilisk::setupBasiliskEnv(...)
8. └─reticulate::conda_install(...)
9. └─reticulate::conda_create(...)
10. └─reticulate:::stopf(fmt, envname, result, call. = FALSE)
── Error ('test-gtex_8tissues.R:53:10'): Reading H5AD works ────────────────────
Error: Error creating conda environment '/var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6' [exit code 1]
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-gtex_8tissues.R:52:5
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─zellkonverter::readH5AD(file) at test-gtex_8tissues.R:53:10
7. └─basilisk::basiliskRun(...)
8. └─basilisk::basiliskStart(...)
9. └─basilisk::obtainEnvironmentPath(env)
10. └─basilisk::setupBasiliskEnv(...)
11. └─reticulate::conda_install(...)
12. └─reticulate::conda_create(...)
13. └─reticulate:::stopf(fmt, envname, result, call. = FALSE)
── Error ('test-gtex_8tissues.R:59:1'): (code run outside of `test_that()`) ────
Error: Error creating conda environment '/var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6' [exit code 1]
Backtrace:
▆
1. ├─base::suppressWarnings(readH5AD(file)) at test-gtex_8tissues.R:59:1
2. │ └─base::withCallingHandlers(...)
3. └─zellkonverter::readH5AD(file)
4. └─basilisk::basiliskRun(...)
5. └─basilisk::basiliskStart(...)
6. └─basilisk::obtainEnvironmentPath(env)
7. └─basilisk::setupBasiliskEnv(...)
8. └─reticulate::conda_install(...)
9. └─reticulate::conda_create(...)
10. └─reticulate:::stopf(fmt, envname, result, call. = FALSE)
── Error ('test-pegasus_marrow.R:30:5'): Reading H5AD works ────────────────────
Error: Error creating conda environment '/var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6' [exit code 1]
Backtrace:
▆
1. └─zellkonverter::readH5AD(file) at test-pegasus_marrow.R:30:5
2. └─basilisk::basiliskRun(...)
3. └─basilisk::basiliskStart(...)
4. └─basilisk::obtainEnvironmentPath(env)
5. └─basilisk::setupBasiliskEnv(...)
6. └─reticulate::conda_install(...)
7. └─reticulate::conda_create(...)
8. └─reticulate:::stopf(fmt, envname, result, call. = FALSE)
── Error ('test-pegasus_marrow.R:34:1'): (code run outside of `test_that()`) ───
Error: Error creating conda environment '/var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6' [exit code 1]
Backtrace:
▆
1. ├─base::suppressWarnings(readH5AD(file)) at test-pegasus_marrow.R:34:1
2. │ └─base::withCallingHandlers(...)
3. └─zellkonverter::readH5AD(file)
4. └─basilisk::basiliskRun(...)
5. └─basilisk::basiliskStart(...)
6. └─basilisk::obtainEnvironmentPath(env)
7. └─basilisk::setupBasiliskEnv(...)
8. └─reticulate::conda_install(...)
9. └─reticulate::conda_create(...)
10. └─reticulate:::stopf(fmt, envname, result, call. = FALSE)
── Error ('test-scIB_pancreas.R:15:5'): Reading H5AD works ─────────────────────
Error: Error creating conda environment '/var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6' [exit code 1]
Backtrace:
▆
1. └─zellkonverter::readH5AD(file) at test-scIB_pancreas.R:15:5
2. └─basilisk::basiliskRun(...)
3. └─basilisk::basiliskStart(...)
4. └─basilisk::obtainEnvironmentPath(env)
5. └─basilisk::setupBasiliskEnv(...)
6. └─reticulate::conda_install(...)
7. └─reticulate::conda_create(...)
8. └─reticulate:::stopf(fmt, envname, result, call. = FALSE)
── Error ('test-scIB_pancreas.R:19:1'): (code run outside of `test_that()`) ────
Error: Error creating conda environment '/var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6' [exit code 1]
Backtrace:
▆
1. ├─base::suppressWarnings(readH5AD(file)) at test-scIB_pancreas.R:19:1
2. │ └─base::withCallingHandlers(...)
3. └─zellkonverter::readH5AD(file)
4. └─basilisk::basiliskRun(...)
5. └─basilisk::basiliskStart(...)
6. └─basilisk::obtainEnvironmentPath(env)
7. └─basilisk::setupBasiliskEnv(...)
8. └─reticulate::conda_install(...)
9. └─reticulate::conda_create(...)
10. └─reticulate:::stopf(fmt, envname, result, call. = FALSE)
── Error ('test-scanpy_pbmc3k.R:25:5'): Reading H5AD works ─────────────────────
Error: Error creating conda environment '/var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6' [exit code 1]
Backtrace:
▆
1. └─zellkonverter::readH5AD(file) at test-scanpy_pbmc3k.R:25:5
2. └─basilisk::basiliskRun(...)
3. └─basilisk::basiliskStart(...)
4. └─basilisk::obtainEnvironmentPath(env)
5. └─basilisk::setupBasiliskEnv(...)
6. └─reticulate::conda_install(...)
7. └─reticulate::conda_create(...)
8. └─reticulate:::stopf(fmt, envname, result, call. = FALSE)
── Error ('test-scanpy_pbmc3k.R:29:1'): (code run outside of `test_that()`) ────
Error: Error creating conda environment '/var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6' [exit code 1]
Backtrace:
▆
1. ├─base::suppressWarnings(readH5AD(file)) at test-scanpy_pbmc3k.R:29:1
2. │ └─base::withCallingHandlers(...)
3. └─zellkonverter::readH5AD(file)
4. └─basilisk::basiliskRun(...)
5. └─basilisk::basiliskStart(...)
6. └─basilisk::obtainEnvironmentPath(env)
7. └─basilisk::setupBasiliskEnv(...)
8. └─reticulate::conda_install(...)
9. └─reticulate::conda_create(...)
10. └─reticulate:::stopf(fmt, envname, result, call. = FALSE)
── Error ('test-scanpy_trajectory.R:22:5'): Reading H5AD works ─────────────────
Error: Error creating conda environment '/var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6' [exit code 1]
Backtrace:
▆
1. └─zellkonverter::readH5AD(file) at test-scanpy_trajectory.R:22:5
2. └─basilisk::basiliskRun(...)
3. └─basilisk::basiliskStart(...)
4. └─basilisk::obtainEnvironmentPath(env)
5. └─basilisk::setupBasiliskEnv(...)
6. └─reticulate::conda_install(...)
7. └─reticulate::conda_create(...)
8. └─reticulate:::stopf(fmt, envname, result, call. = FALSE)
── Error ('test-scanpy_trajectory.R:26:1'): (code run outside of `test_that()`) ──
Error: Error creating conda environment '/var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6' [exit code 1]
Backtrace:
▆
1. ├─base::suppressWarnings(readH5AD(file)) at test-scanpy_trajectory.R:26:1
2. │ └─base::withCallingHandlers(...)
3. └─zellkonverter::readH5AD(file)
4. └─basilisk::basiliskRun(...)
5. └─basilisk::basiliskStart(...)
6. └─basilisk::obtainEnvironmentPath(env)
7. └─basilisk::setupBasiliskEnv(...)
8. └─reticulate::conda_install(...)
9. └─reticulate::conda_create(...)
10. └─reticulate:::stopf(fmt, envname, result, call. = FALSE)
── Error ('test-scvelo_pancreas.R:38:5'): Reading H5AD works ───────────────────
Error: Error creating conda environment '/var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6' [exit code 1]
Backtrace:
▆
1. └─zellkonverter::readH5AD(file) at test-scvelo_pancreas.R:38:5
2. └─basilisk::basiliskRun(...)
3. └─basilisk::basiliskStart(...)
4. └─basilisk::obtainEnvironmentPath(env)
5. └─basilisk::setupBasiliskEnv(...)
6. └─reticulate::conda_install(...)
7. └─reticulate::conda_create(...)
8. └─reticulate:::stopf(fmt, envname, result, call. = FALSE)
── Error ('test-scvelo_pancreas.R:42:1'): (code run outside of `test_that()`) ──
Error: Error creating conda environment '/var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6' [exit code 1]
Backtrace:
▆
1. ├─base::suppressWarnings(readH5AD(file)) at test-scvelo_pancreas.R:42:1
2. │ └─base::withCallingHandlers(...)
3. └─zellkonverter::readH5AD(file)
4. └─basilisk::basiliskRun(...)
5. └─basilisk::basiliskStart(...)
6. └─basilisk::obtainEnvironmentPath(env)
7. └─basilisk::setupBasiliskEnv(...)
8. └─reticulate::conda_install(...)
9. └─reticulate::conda_create(...)
10. └─reticulate:::stopf(fmt, envname, result, call. = FALSE)
── Error ('test-scvi_citeseq.R:24:5'): Reading H5AD works ──────────────────────
Error: Error creating conda environment '/var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6' [exit code 1]
Backtrace:
▆
1. ├─testthat::expect_warning(readH5AD(file)) at test-scvi_citeseq.R:24:5
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─zellkonverter::readH5AD(file)
7. └─basilisk::basiliskRun(...)
8. └─basilisk::basiliskStart(...)
9. └─basilisk::obtainEnvironmentPath(env)
10. └─basilisk::setupBasiliskEnv(...)
11. └─reticulate::conda_install(...)
12. └─reticulate::conda_create(...)
13. └─reticulate:::stopf(fmt, envname, result, call. = FALSE)
── Error ('test-scvi_citeseq.R:28:1'): (code run outside of `test_that()`) ─────
Error: Error creating conda environment '/var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6' [exit code 1]
Backtrace:
▆
1. ├─base::suppressWarnings(readH5AD(file)) at test-scvi_citeseq.R:28:1
2. │ └─base::withCallingHandlers(...)
3. └─zellkonverter::readH5AD(file)
4. └─basilisk::basiliskRun(...)
5. └─basilisk::basiliskStart(...)
6. └─basilisk::obtainEnvironmentPath(env)
7. └─basilisk::setupBasiliskEnv(...)
8. └─reticulate::conda_install(...)
9. └─reticulate::conda_create(...)
10. └─reticulate:::stopf(fmt, envname, result, call. = FALSE)
── Error ('test-squidpy_visium.R:37:5'): Reading H5AD works ────────────────────
Error: Error creating conda environment '/var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6' [exit code 1]
Backtrace:
▆
1. └─zellkonverter::readH5AD(file) at test-squidpy_visium.R:37:5
2. └─basilisk::basiliskRun(...)
3. └─basilisk::basiliskStart(...)
4. └─basilisk::obtainEnvironmentPath(env)
5. └─basilisk::setupBasiliskEnv(...)
6. └─reticulate::conda_install(...)
7. └─reticulate::conda_create(...)
8. └─reticulate:::stopf(fmt, envname, result, call. = FALSE)
── Error ('test-squidpy_visium.R:41:1'): (code run outside of `test_that()`) ───
Error: Error creating conda environment '/var/cache/basilisk/1.17.2/zellkonverter/1.15.3/zellkonverterAnnDataEnv-0.10.6' [exit code 1]
Backtrace:
▆
1. ├─base::suppressWarnings(readH5AD(file)) at test-squidpy_visium.R:41:1
2. │ └─base::withCallingHandlers(...)
3. └─zellkonverter::readH5AD(file)
4. └─basilisk::basiliskRun(...)
5. └─basilisk::basiliskStart(...)
6. └─basilisk::obtainEnvironmentPath(env)
7. └─basilisk::setupBasiliskEnv(...)
8. └─reticulate::conda_install(...)
9. └─reticulate::conda_create(...)
10. └─reticulate:::stopf(fmt, envname, result, call. = FALSE)
[ FAIL 20 | WARN 14 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
##############################################################################
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###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no zellkonverter_1.15.3.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc-longtests/meat/zellkonverter.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘zellkonverter/DESCRIPTION’ ... OK
* this is package ‘zellkonverter’ version ‘1.15.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘zellkonverter’ can be installed ... NOTE
Found the following notes/warnings:
Non-staged installation was used
See ‘/home/biocbuild/bbs-3.20-bioc-longtests/meat/zellkonverter.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
Running ‘testthat.R’
ERROR
Running the tests in ‘longtests/testthat.R’ failed.
Last 13 lines of output:
▆
1. ├─base::suppressWarnings(readH5AD(file)) at test-squidpy_visium.R:41:1
2. │ └─base::withCallingHandlers(...)
3. └─zellkonverter::readH5AD(file)
4. └─basilisk::basiliskRun(...)
5. └─basilisk::basiliskStart(...)
6. └─basilisk::obtainEnvironmentPath(env)
7. └─basilisk::setupBasiliskEnv(...)
8. └─reticulate::conda_install(...)
9. └─reticulate::conda_create(...)
10. └─reticulate:::stopf(fmt, envname, result, call. = FALSE)
[ FAIL 20 | WARN 14 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
* DONE
Status: 1 ERROR, 1 NOTE
See
‘/home/biocbuild/bbs-3.20-bioc-longtests/meat/zellkonverter.Rcheck/00check.log’
for details.
zellkonverter.Rcheck/00install.out
* installing *source* package ‘zellkonverter’ ... ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (zellkonverter)