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This page was generated on 2024-10-31 12:15 -0400 (Thu, 31 Oct 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4503
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4763
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4506
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4537
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4493
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2285/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
zFPKM 1.28.0  (landing page)
Ron Ammar
Snapshot Date: 2024-10-30 14:17 -0400 (Wed, 30 Oct 2024)
git_url: https://git.bioconductor.org/packages/zFPKM
git_branch: RELEASE_3_20
git_last_commit: 88fadec
git_last_commit_date: 2024-10-29 10:21:21 -0400 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for zFPKM on kunpeng2

To the developers/maintainers of the zFPKM package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/zFPKM.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: zFPKM
Version: 1.28.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data zFPKM
StartedAt: 2024-10-31 05:52:49 -0000 (Thu, 31 Oct 2024)
EndedAt: 2024-10-31 05:54:01 -0000 (Thu, 31 Oct 2024)
EllapsedTime: 72.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data zFPKM
###
##############################################################################
##############################################################################


* checking for file ‘zFPKM/DESCRIPTION’ ... OK
* preparing ‘zFPKM’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘zFPKM.Rmd’ using rmarkdown
trying URL 'ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94802/suppl/GSE94802_Minkina_etal_normalized_FPKM.csv.gz'
Content type 'unknown' length 800733 bytes (781 KB)
==================================================
trying URL 'ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94802/suppl/GSE94802_Minkina_etal_raw_counts.csv.gz'
Content type 'unknown' length 574041 bytes (560 KB)
==================================================

Quitting from lines 34-70 [unnamed-chunk-1] (zFPKM.Rmd)
Error: processing vignette 'zFPKM.Rmd' failed with diagnostics:
cannot open URL 'ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94802/suppl/GSE94802_Minkina_etal_raw_counts.csv.gz'
--- failed re-building ‘zFPKM.Rmd’

SUMMARY: processing the following file failed:
  ‘zFPKM.Rmd’

Error: Vignette re-building failed.
Execution halted