Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-10-03 11:42 -0400 (Thu, 03 Oct 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4461 |
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4716 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4466 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4498 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4446 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4445 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2088/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
systemPipeR 2.11.7 (landing page) Thomas Girke
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | ERROR | ||||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the systemPipeR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/systemPipeR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: systemPipeR |
Version: 2.11.7 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:systemPipeR.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings systemPipeR_2.11.7.tar.gz |
StartedAt: 2024-10-03 01:27:23 -0400 (Thu, 03 Oct 2024) |
EndedAt: 2024-10-03 01:27:26 -0400 (Thu, 03 Oct 2024) |
EllapsedTime: 3.0 seconds |
RetCode: 1 |
Status: ERROR |
CheckDir: systemPipeR.Rcheck |
Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:systemPipeR.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings systemPipeR_2.11.7.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/systemPipeR.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘systemPipeR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘systemPipeR’ version ‘2.11.7’ * checking package namespace information ... OK * checking package dependencies ...Warning in read.dcf(file = tmpf) : cannot open compressed file '/tmp/Rtmppd3ozO/file2b4ddd40302388', probable reason 'No such file or directory' Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open the connection Warning in gzfile(file, "rb") : cannot open compressed file '/tmp/Rtmppd3ozO/repos_https%3A%2F%2Fbioconductor.org%2Fpackages%2F3.19%2Fbioc%2Fsrc%2Fcontrib.rds', probable reason 'No such file or directory' Warning in read.dcf(file = tmpf) : cannot open compressed file '/tmp/Rtmppd3ozO/file2b4ddd1075ab1c', probable reason 'No such file or directory' Warning: unable to access index for repository https://bioconductor.org/packages/3.19/bioc/src/contrib: cannot open the connection Warning in gzfile(file, "rb") : cannot open compressed file '/tmp/Rtmppd3ozO/repos_https%3A%2F%2Fbioconductor.org%2Fpackages%2F3.19%2Fdata%2Fannotation%2Fsrc%2Fcontrib.rds', probable reason 'No such file or directory' Warning in read.dcf(file = tmpf) : cannot open compressed file '/tmp/Rtmppd3ozO/file2b4ddd29195d24', probable reason 'No such file or directory' Warning: unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/src/contrib: cannot open the connection Warning in gzfile(file, "rb") : cannot open compressed file '/tmp/Rtmppd3ozO/repos_https%3A%2F%2Fbioconductor.org%2Fpackages%2F3.19%2Fdata%2Fexperiment%2Fsrc%2Fcontrib.rds', probable reason 'No such file or directory' Warning in read.dcf(file = tmpf) : cannot open compressed file '/tmp/Rtmppd3ozO/file2b4ddd5a16a37a', probable reason 'No such file or directory' Warning: unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/src/contrib: cannot open the connection Warning in gzfile(file, mode) : cannot open compressed file '/tmp/Rtmppd3ozO/runri2b4ddd1a47d453', probable reason 'No space left on device' Error in gzfile(file, mode) : cannot open the connection Execution halted